Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation (Q21563549)

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Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation

Language	Label	Description	Also known as
English	Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation	scientific article	Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation

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scholarly article

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Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation (English)

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5

object named as

Martin Hirst

author given names

Martin

author last names

Hirst

1 reference

PubMed publication ID

18 September 2022

object named as

Steven Jones

4

author given names

Steven

author last names

Jones

1 reference

PubMed publication ID

18 September 2022

author name string

Sushma Shivaswamy

1

author given names

Sushma

author last names

Shivaswamy

1 reference

PubMed publication ID

18 September 2022

Akshay Bhinge

2

author given names

Akshay

author last names

Bhinge

1 reference

PubMed publication ID

18 September 2022

Yongjun Zhao

3

author given names

Yongjun

author last names

Zhao

1 reference

PubMed publication ID

18 September 2022

Vishwanath R Iyer

6

author given names

Vishwanath R

author last names

Iyer

1 reference

PubMed publication ID

18 September 2022

language of work or name

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publication date

18 March 2008

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6

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3

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e65

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copyright license

Creative Commons Attribution 4.0 International

18 March 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

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A genomic code for nucleosome positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Improved alignment of nucleosome DNA sequences using a mixture model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Global nucleosome occupancy in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Crystal structure of the nucleosome core particle at 2.8 Å resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

The role of chromatin during transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Transcriptional regulatory networks in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Chromatin remodelling at promoters suppresses antisense transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Transcriptional regulatory code of a eukaryotic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Cbf1p is required for chromatin remodeling at promoter-proximal CACGTG motifs in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

19 March 2017

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

7 April 2017

A high-resolution atlas of nucleosome occupancy in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Nucleosome positioning signals in genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Rules and regulation in the primary structure of chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Genetic reconstruction of a functional transcriptional regulatory network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Genome-scale identification of nucleosome positions in S. cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Global role of TATA box-binding protein recruitment to promoters in mediating gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Genome-wide analysis of the biology of stress responses through heat shock transcription factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

12 September 2017

Global position and recruitment of HATs and HDACs in the yeast genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

27 September 2017

Antagonistic forces that position nucleosomes in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

30 May 2018

Evidence for nucleosome depletion at active regulatory regions genome-wide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

29 November 2018

Identification and distinct regulation of yeast TATA box-containing genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267817

29 November 2018

Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18351804

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional requirements for the chromatin transition at the PHO5 promoter in Saccharomyces cerevisiae upon PHO5 activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18351804

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleosome positions predicted through comparative genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/18351804

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PBIO.0060065

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

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PubMed publication ID

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ResearchGate publication ID

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