Algorithm-driven artifacts in median polish summarization of microarray data (Q21284343)

18 August 2022

Bjoern Usadel

Bjoern

Usadel

1 reference

18 August 2022

Anthony M

Bolger

Anthony M Bolger

1 reference

18 August 2022

Marc Lohse

Marc

Lohse

1 reference

1005270237

describes a project that uses

18 August 2022

language of work or name

English

0 references

publication date

2010

0 references

0 references

0 references

0 references

553

0 references

limma

object named as

limma

2 references

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/2998528

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

19 March 2017

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Bioconductor: open software development for computational biology and bioinformatics

19 March 2017

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Oncogenic role of the ubiquitin ligase subunit Skp2 in human breast cancer

19 March 2017

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Cluster analysis and display of genome-wide expression patterns

19 March 2017

1 reference

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Exploration, normalization, and summaries of high density oligonucleotide array probe level data

19 March 2017

1 reference

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Summaries of Affymetrix GeneChip probe level data

19 March 2017

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

19 March 2017

1 reference

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Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

19 March 2017

1 reference

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Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

19 March 2017

1 reference

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Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

19 March 2017

1 reference

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Quantitative monitoring of gene expression patterns with a complementary DNA microarray

19 March 2017

1 reference

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Functional Associations by Response Overlap (FARO), a functional genomics approach matching gene expression phenotypes

19 March 2017

1 reference

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Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks

19 March 2017

1 reference

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More powerful procedures for multiple significance testing

19 March 2017

1 reference

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

19 March 2017

1 reference

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Reverse engineering of regulatory networks in human B cells

7 April 2017

1 reference

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Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

10 May 2017

1 reference

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Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples

12 September 2017

1 reference

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A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

12 September 2017

1 reference

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Correction of technical bias in clinical microarray data improves concordance with known biological information

12 September 2017

1 reference

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The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

12 September 2017

1 reference

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ArrayExpress--a public database of microarray experiments and gene expression profiles

12 September 2017

1 reference

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Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma

12 September 2017

1 reference

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How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results

12 September 2017

1 reference

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Unsupervised pattern recognition: an introduction to the whys and wherefores of clustering microarray data

12 September 2017

1 reference

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Preprocessing of oligonucleotide array data

12 September 2017

1 reference

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Algorithms for high-density oligonucleotide array

12 September 2017

1 reference

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Comparisons and validation of statistical clustering techniques for microarray gene expression data

12 September 2017

1 reference

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What does PLIER really do?

12 September 2017

1 reference

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Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998528

Comparison of Affymetrix GeneChip expression measures.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998528

Stochastic models inspired by hybridization theory for short oligonucleotide arrays.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998528

A benchmark for Affymetrix GeneChip expression measures

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998528

Robust estimators for expression analysis

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998528

29 November 2018

Identifiers

DOI

10.1186/1471-2105-11-553

1 reference

journals/bmcbi/GiorgiBLU10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1005270237

0 references

1 reference

1 reference

PubMed publication ID

21070630

1 reference