Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing (Q21194880)

17 August 2022

John Castle

John

Castle

1 reference

17 August 2022

Phil Garrett-Engele

author given names

Phil

author last names

Garrett-Engele

1 reference

17 August 2022

Roland Stoughton

author given names

Roland

author last names

Stoughton

1 reference

17 August 2022

Christopher D. Armour

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

16 March 2024

Sven J. Duenwald

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

16 March 2024

Patrick M. Loerch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

16 March 2024

Michael R. Meyer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

16 March 2024

Mark L. Parrish

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

16 March 2024

Daniel D. Shoemaker

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

16 March 2024

Jason M. Johnson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

16 March 2024

language of work or name

English

0 references

publication date

2003

0 references

19 September 2003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

full work available at URL

16 March 2024

https://genomebiology.biomedcentral.com/counter/pdf/10.1186/gb-2003-4-10-r66

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

https://europepmc.org/articles/PMC328455

16 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

https://europepmc.org/articles/PMC328455?pdf=render

16 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14519201

https://link.springer.com/content/pdf/10.1186/gb-2003-4-10-r66.pdf

16 March 2024

file format

Portable Document Format

1 reference

Crossref

DOI

10.1186/GB-2003-4-10-R66

https://api.crossref.org/works/10.1186/GB-2003-4-10-R66

https://link.springer.com/article/10.1186/gb-2003-4-10-r66/fulltext.html

16 March 2024

1 reference

10.1186/GB-2003-4-10-R66

https://api.crossref.org/works/10.1186/GB-2003-4-10-R66

16 March 2024

0 references

0 references

0 references

R66

0 references

cites work

Initial sequencing and analysis of the human genome

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Large-scale transcriptional activity in chromosomes 21 and 22

19 March 2017

1 reference

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The contribution of exon-skipping events on chromosome 22 to protein coding diversity.

19 March 2017

1 reference

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Alternative splicing of human synexin mRNA in brain, cardiac, and skeletal muscle alters the unique N-terminal domain

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Alternative pre-mRNA splicing and proteome expansion in metazoans

19 March 2017

1 reference

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A genomic view of alternative splicing

7 April 2017

1 reference

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Genome-wide detection of alternative splicing in expressed sequences of human genes

7 April 2017

1 reference

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Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

7 April 2017

1 reference

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Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles

7 April 2017

1 reference

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A computer program for aligning a cDNA sequence with a genomic DNA sequence

7 April 2017

1 reference

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A human DNA segment with properties of the gene that predisposes to retinoblastoma and osteosarcoma

7 April 2017

1 reference

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Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Genome-wide detection of tissue-specific alternative splicing in the human transcriptome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays

12 September 2017

1 reference

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Predicting splice variant from DNA chip expression data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

A clean data set of EST-confirmed splice sites from Homo sapiens and standards for clean-up procedures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

The Regulation of Splice-Site Selection, and Its Role in Human Disease

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Profiling alternative splicing on fiber-optic arrays

12 September 2017

1 reference

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Experimental annotation of the human genome using microarray technology

27 September 2017

1 reference

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Analysis of canonical and non-canonical splice sites in mammalian genomes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Frequent alternative splicing of human genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Gene structure-based splice variant deconvolution using a microarray platform

27 September 2017

1 reference

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EST comparison indicates 38% of human mRNAs contain possible alternative splice forms.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328455

Chipping away at the transcriptome

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14519201

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2003-4-10-R66

0 references

0 references

PMC publication ID

328455

0 references