Using comparative genomics to reorder the human genome sequence into a virtual sheep genome (Q21184117)

17 August 2022

Brian P Dalrymple

Brian P

Dalrymple

1 reference

17 August 2022

John McEwan

John

McEwan

1 reference

17 August 2022

Jyoti

Shetty

Jyoti Shetty

1 reference

17 August 2022

Ewen F Kirkness

Ewen F

Kirkness

1 reference

17 August 2022

Mikhail Nefedov

Mikhail

Nefedov

1 reference

17 August 2022

Sean McWilliam

Sean

McWilliam

1 reference

17 August 2022

Abhirami Ratnakumar

Abhirami

Ratnakumar

1 reference

17 August 2022

Wes Barris

Wes

Barris

1 reference

17 August 2022

Shaying Zhao

Shaying

Zhao

1 reference

17 August 2022

Jillian F Maddox

Jillian F

Maddox

1 reference

17 August 2022

Margaret O'Grady

Margaret

O'Grady

1 reference

17 August 2022

Allan M Crawford

Allan M

Crawford

1 reference

17 August 2022

Tim Smith

Tim

Smith

1 reference

17 August 2022

Pieter J de Jong

Pieter J

de Jong

1 reference

17 August 2022

V Hutton Oddy

V Hutton

Oddy

1 reference

17 August 2022

Noelle E Cockett

Noelle E

Cockett

1 reference

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

17 August 2022

language of work or name

English

0 references

publication date

2007

0 references

0 references

0 references

0 references

R152

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

The UCSC Genome Browser Database: update 2006

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

End-sequence profiling: sequence-based analysis of aberrant genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

The generic genome browser: a building block for a model organism system database

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Genome sequence, comparative analysis and haplotype structure of the domestic dog

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Finishing the euchromatic sequence of the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Uprobe: a genome-wide universal probe resource for comparative physical mapping in vertebrates

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Distribution and intensity of constraint in mammalian genomic sequence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

A human-horse comparative map based on equine BAC end sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

A BAC clone-based physical map of ovine major histocompatibility complex

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Advances in livestock genomics: opening the barn door

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Pooled genomic indexing of rhesus macaque

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Human, mouse, and rat genome large-scale rearrangements: stability versus speciation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Current status of the ovine genome map.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

A cattle-human comparative map built with cattle BAC-ends and human genome sequence

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

A physical map of the mouse genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Parallel construction of orthologous sequence-ready clone contig maps in multiple species

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

An enhanced linkage map of the sheep genome comprising more than 1000 loci

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Human and mouse gene structure: comparative analysis and application to exon prediction

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Construction of a BAC contig map of chromosome 16q by two-dimensional overgo hybridization

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Construction and characterization of an ovine bacterial artificial chromosome library.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Comparison of the human with the sheep genomes by use of human chromosome-specific painting probes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Construction and characterization of a sheep BAC library of three genome equivalents

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

An improved approach for construction of bacterial artificial chromosome libraries.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

A second-generation linkage map of the sheep genome.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Use of the Indian muntjac idiogram to align conserved chromosomal segments in sheep and human genomes by chromosome painting

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

High Throughput Fingerprint Analysis of Large-Insert Clones

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

An autosomal genetic linkage map of the sheep genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Stability of rearrangement measures in the comparison of genome sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Reconstructing tumor genome architectures

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

The dog genome: survey sequencing and comparative analysis

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

International System for Chromosome Nomenclature of Domestic Bovids (ISCNDB 2000).

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323240

Bovine genomics update: making a cow jump over the moon

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17663790

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2007-8-7-R152

0 references