Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling (Q21089841)

4 August 2022

author name string

Alexis Crête-Lafrenière

series ordinal

author given names

Alexis

author last names

Crête-Lafrenière

1 reference

4 August 2022

Laura K Weir

series ordinal

author given names

Laura K

author last names

Weir

1 reference

Creative Commons Attribution 4.0 International

4 August 2022

language of work or name

English

0 references

publication date

2012

0 references

0 references

0 references

0 references

e46662

0 references

start time

5 October 2012

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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19 March 2017

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7 April 2017

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7 April 2017

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Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

7 April 2017

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7 April 2017

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DNA barcoding Australia's fish species

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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12 September 2017

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Hidden likelihood support in genomic data: can forty-five wrongs make a right?

12 September 2017

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Phylogenetic analysis of the genus Thymallus (grayling) based on mtDNA control region and ATPase 6 genes, with inferences on control region constraints and broad-scale Eurasian phylogeography.

12 September 2017

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12 September 2017

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Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

12 September 2017

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12 September 2017

1 reference

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Molecular systematics of Salmonidae: combined nuclear data yields a robust phylogeny

12 September 2017

1 reference

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12 September 2017

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Basal euteleostean relationships: a mitogenomic perspective on the phylogenetic reality of the “Protacanthopterygii”

12 September 2017

1 reference

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Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

12 September 2017

1 reference

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Increased taxon sampling is advantageous for phylogenetic inference

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465342

Multiple sources of character information and the phylogeny of Hawaiian drosophilids

12 September 2017

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Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts

12 September 2017

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SOAP, cleaning multiple alignments from unstable blocks

12 September 2017

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Holarctic phylogeography of Arctic charr (Salvelinus alpinus L.) inferred from mitochondrial DNA sequences

12 September 2017

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Chromosome evolution in the Salmonidae (Pisces): an update

12 September 2017

1 reference

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Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants

12 September 2017

1 reference

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Details of retropositional genome dynamics that provide a rationale for a generic division: the distinct branching of all the pacific salmon and trout (Oncorhynchus) from the Atlantic salmon and trout (Salmo).

12 September 2017

1 reference

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Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution.

12 September 2017

1 reference

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Linkage relationships reflecting ancestral tetraploidy in salmonid fish

12 September 2017

1 reference

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THE LIMITS OF AMINO ACID SEQUENCE DATA IN ANGIOSPERM PHYLOGENETIC RECONSTRUCTION.

12 September 2017

1 reference

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Novel SINE families from salmons validate Parahucho (Salmonidae) as a distinct genus and give evidence that SINEs can incorporate LINE-related 3'-tails of other SINEs

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465342

Accounting for gene rate heterogeneity in phylogenetic inference

30 May 2018

1 reference

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Extinction rates can be estimated from molecular phylogenies.

30 May 2018

1 reference

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Evolutionary relationships of the salmonid fish genus Salvelinus inferred from DNA sequences of the first internal transcribed spacer (ITS 1) of ribosomal DNA

30 May 2018

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30 May 2018

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SPECIES FLOCK IN THE NORTH AMERICAN GREAT LAKES: MOLECULAR ECOLOGY OF LAKE NIPIGON CISCOES (TELEOSTEI: COREGONIDAE: COREGONUS).

30 May 2018

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Grayling (Thymallinae) phylogeny within salmonids: complete mitochondrial DNA sequences of Thymallus arcticus and Thymallus thymallus

29 November 2018

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Geological dates and molecular rates: fish DNA sheds light on time dependency

29 November 2018

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Parallel evolution of ecomorphological traits in the European whitefish Coregonus lavaretus (L.) species complex during postglacial times.

29 November 2018

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Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors?

29 November 2018

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Calculating the evolutionary rates of different genes: a fast, accurate estimator with applications to maximum likelihood phylogenetic analysis.

29 November 2018

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The comparison of the confidence regions in phylogeny

29 November 2018

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Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics.

29 November 2018

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Taxon sampling effects in molecular clock dating: an example from the African Restionaceae

29 November 2018

1 reference

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Gene tree distributions under the coalescent process

29 November 2018

1 reference

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Impact of taxon sampling on the estimation of rates of evolution at sites

29 November 2018

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Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.

29 November 2018

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Inferring the root of a phylogenetic tree

29 November 2018

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Clinal variation at microsatellite loci reveals historical secondary intergradation between glacial races of Coregonus artedi (Teleostei: Coregoninae).

29 November 2018

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Mitochondrial DNA phylogeography of lake cisco (Coregonus artedi): evidence supporting extensive secondary contacts between two glacial races

29 November 2018

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Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa

29 November 2018

1 reference

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Complex evolution of a salmonid microsatellite locus and its consequences in inferring allelic divergence from size information.

29 November 2018

1 reference

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Phylogenetic Inference from Restriction Endonuclease Cleavage Site Maps with Particular Reference to the Evolution of Humans and the Apes

29 November 2018

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12 December 2020

Comparative phylogenetic analysis of the evolution of semelparity and life history in salmonid fishes

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12 December 2020

Phylogenetic relationship of the genus Oncorhynchus species inferred from nuclear and mitochondrial markers

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12 December 2020

Evidence for historical introgression along a contact zone between two species of char (Pisces: Salmonidae) in northwestern North America

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12 December 2020

Evidence for bimodal hybrid zones between two species of char (Pisces: Salvelinus) in northwestern North America

1 reference

12 December 2020

The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

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12 December 2020

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

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12 December 2020

10.1371/JOURNAL.PONE.0046662

Identifiers

DOI

1 reference

ADS bibcode

2012PLoSO...746662C

0 references

1 reference

1 reference

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