PyNAST: a flexible tool for aligning sequences to a template alignment (Q29616628)

From Wikidata

Jump to navigation Jump to search

scientific article (publication date: 15 January 2010)

edit

Language	Label	Description	Also known as
English	PyNAST: a flexible tool for aligning sequences to a template alignment	scientific article (publication date: 15 January 2010)

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

title

PyNAST: a flexible tool for aligning sequences to a template alignment (English)

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

main subject

sequence alignment

1 reference

based on heuristic

inferred from title

author

Frederic D. Bushman

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

Gary L Andersen

series ordinal

5

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

Rob Knight

series ordinal

6

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

J Gregory Caporaso

series ordinal

1

object named as

J Gregory Caporaso

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

Kyle Bittinger

series ordinal

2

object named as

Kyle Bittinger

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

Todd Z. DeSantis

series ordinal

4

object named as

Todd Z DeSantis

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

language of work or name

English

1 reference

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

publication date

13 November 2009

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

published in

Bioinformatics

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

volume

26

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

issue

2

2 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

page(s)

266-267

1 reference

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

cites work

PyCogent: a toolkit for making sense from sequence

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804299

retrieved

30 April 2017

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804299

retrieved

30 April 2017

MAFFT version 5: improvement in accuracy of multiple sequence alignment

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804299

retrieved

30 April 2017

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804299

retrieved

30 April 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804299

retrieved

30 April 2017

Basic local alignment search tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804299

retrieved

30 April 2017

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804299

retrieved

30 April 2017

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP636

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

166871

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

DBLP publication ID

journals/bioinformatics/CaporasoBBDAK10

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

OpenCitations bibliographic resource ID

166871

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

166871

PMC publication ID

2804299

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

166871

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

PubMed publication ID

19914921

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19914921

retrieved

30 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

166871

stated in

Europe PubMed Central

PMC publication ID

2804299

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19914921%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 February 2020

ResearchGate publication ID

38090884

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q29616628&oldid=2238428280"