Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms (Q28821402)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27842572%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms (English)

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27 March 2020

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27 March 2020

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27 March 2020

author name string

Emily A Seward

series ordinal

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Steven Kelly

series ordinal

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language of work or name

English

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publication date

15 November 2016

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27 March 2020

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27 March 2020

volume

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issue

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27 March 2020

page(s)

226

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Comparative Life Cycle Transcriptomics Revises Leishmania mexicana Genome Annotation and Links a Chromosome Duplication with Parasitism of Vertebrates

27 March 2020

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16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine

16 March 2017

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16 March 2017

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Genome Sequence of Mycoplasma hyorhinis Strain DBS 1050.

16 March 2017

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Inferring gene function from evolutionary change in signatures of translation efficiency

3 June 2018

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The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

3 June 2018

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Genome Sequence of Mycoplasma parvum (Formerly Eperythrozoon parvum), a Diminutive Hemoplasma of the Pig.

3 June 2018

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Comparison of the complete genome sequence of two closely related isolates of 'Candidatus Phytoplasma australiense' reveals genome plasticity

3 June 2018

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Metabolomics guides rational development of a simplified cell culture medium for drug screening against Trypanosoma brucei.

3 June 2018

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Codon optimization significantly improves the expression level of a keratinase gene in Pichia pastoris

3 June 2018

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Comparative genomic analyses of Mycoplasma hyopneumoniae pathogenic 168 strain and its high-passaged attenuated strain

3 June 2018

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Contributions of speed and accuracy to translational selection in bacteria

3 June 2018

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Draft genome sequences of four axenic Mycoplasma genitalium strains isolated from Denmark, Japan, and Australia

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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Mutation bias is the driving force of codon usage in the Gallus gallus genome

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution

3 June 2018

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Mutational patterns cannot explain genome composition: Are there any neutral sites in the genomes of bacteria?

3 June 2018

1 reference

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Translational selection is ubiquitous in prokaryotes

3 June 2018

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The influence of anticodon-codon interactions and modified bases on codon usage bias in bacteria.

3 June 2018

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An evolutionarily conserved mechanism for controlling the efficiency of protein translation

3 June 2018

1 reference

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Translation efficiency is determined by both codon bias and folding energy

3 June 2018

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3 June 2018

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The evolutionary consequences of erroneous protein synthesis.

3 June 2018

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3 June 2018

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Low contents of carbon and nitrogen in highly abundant proteins: evidence of selection for the economy of atomic composition

3 June 2018

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3 June 2018

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3 June 2018

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Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes

3 June 2018

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L-arginine metabolism and its impact on host immunity against Leishmania infection

3 June 2018

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3 June 2018

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Tissue-specific codon usage and the expression of human genes

3 June 2018

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Adaptive role of increased frequency of polypurine tracts in mRNA sequences of thermophilic prokaryotes

3 June 2018

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Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome

3 June 2018

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3 June 2018

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3 June 2018

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Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

3 June 2018

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Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons.

3 June 2018

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A mollicute (mycoplasma) DNA repair enzyme: purification and characterization of uracil-DNA glycosylase

3 June 2018

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Switches in species-specific codon preferences: the influence of mutation biases

3 June 2018

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3 June 2018

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The selection-mutation-drift theory of synonymous codon usage

3 June 2018

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Nitrogen-fixing aerobic bacteria have higher genomic GC content than non-fixing species within the same genus.

3 June 2018

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Signatures of nitrogen limitation in the elemental composition of the proteins involved in the metabolic apparatus

21 January 2018

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Base composition bias might result from competition for metabolic resources.

21 January 2018

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Ecological nitrogen limitation shapes the DNA composition of plant genomes

21 January 2018

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Protein elemental sparing and codon usage bias are correlated among bacteria.

21 January 2018

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A Partially Defined Medium for the Growth of Mycoplasma

21 January 2018

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21 January 2018

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Signatures of ecological resource availability in the animal and plant proteomes

21 January 2018

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Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage

21 January 2018

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Optimum growth temperature and the base composition of open reading frames in prokaryotes.

21 January 2018

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Generation and analysis of draft sequences of 'stolbur' phytoplasma from multiple displacement amplification templates

21 January 2018

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Codon usage determines translation rate in Escherichia coli

21 January 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/27842572

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13059-016-1087-9

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27842572%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

27 March 2020

1051012415

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27842572%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

PubMed publication ID

27842572

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27842572%20AND%20SRC:MED&resulttype=core&format=json