The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state (Q28534712)

April 2022 Public Data File from Crossref

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29 September 2017

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Silent information regulator 3: the Goldilocks of the silencing complex

29 September 2017

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29 September 2017

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29 September 2017

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The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion

29 September 2017

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29 September 2017

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Polycomb complexes and epigenetic states

29 September 2017

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Synthetic lethal screens identify gene silencing processes in yeast and implicate the acetylated amino terminus of Sir3 in recognition of the nucleosome core

29 September 2017

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POF and HP1 bind expressed exons, suggesting a balancing mechanism for gene regulation

29 September 2017

1 reference

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Epigenetic chromatin silencing: bistability and front propagation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Cross-regulation of histone modifications

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Sir2 deacetylates histone H3 lysine 56 to regulate telomeric heterochromatin structure in yeast.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Theoretical analysis of epigenetic cell memory by nucleosome modification.

29 September 2017

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Spreading of silent chromatin: inaction at a distance

29 September 2017

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Simple histone acetylation plays a complex role in the regulation of gene expression

29 September 2017

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Breaking barriers to transcription elongation

29 September 2017

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Genome-wide patterns of histone modifications in yeast.

29 September 2017

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Cell cycle requirements in assembling silent chromatin in Saccharomyces cerevisiae.

29 September 2017

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Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Heterochromatin formation involves changes in histone modifications over multiple cell generations

29 September 2017

1 reference

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Histone variants meet their match

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Heterochromatin spreading at yeast telomeres occurs in M phase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Structure of the conserved core of the yeast Dot1p, a nucleosomal histone H3 lysine 79 methyltransferase

29 September 2017

1 reference

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The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

29 September 2017

1 reference

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A model for step-wise assembly of heterochromatin in yeast.

29 September 2017

1 reference

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Spreading of Sir3 protein in cells with severe histone H3 hypoacetylation

29 September 2017

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Histone acetylation and deacetylation in yeast

29 September 2017

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Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation

29 September 2017

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Cell-cycle control of the establishment of mating-type silencing in S. cerevisiae

29 September 2017

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A unique class of conditional sir2 mutants displays distinct silencing defects in Saccharomyces cerevisiae.

29 September 2017

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Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae.

29 September 2017

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Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Domains of gene silencing near the left end of chromosome III in Saccharomyces cerevisiae

29 September 2017

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Breaking through to the other side: silencers and barriers

29 September 2017

1 reference

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The molecular biology of the SIR proteins

29 September 2017

1 reference

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Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci

29 September 2017

1 reference

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Identification of a non-basic domain in the histone H4 N-terminus required for repression of the yeast silent mating loci

29 September 2017

1 reference

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A common telomeric gene silencing assay is affected by nucleotide metabolism

29 September 2017

1 reference

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Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Locus dependence in epigenetic chromatin silencing

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Chronux: a platform for analyzing neural signals

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Inheritance of epigenetic chromatin silencing

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

A nonhistone protein-protein interaction required for assembly of the SIR complex and silent chromatin

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Limitations of silencing at native yeast telomeres

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715441

Simplifying a complex code

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Theory for the stability and regulation of epigenetic landscapes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Mutational analysis of the Sir3 BAH domain reveals multiple points of interaction with nucleosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Nonprocessive methylation by Dot1 leads to functional redundancy of histone H3K79 methylation states

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Insights into the impact of histone acetylation and methylation on Sir protein recruitment, spreading, and silencing in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

DNA replication-independent silencing in S. cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003121

Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23874171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Role of the conserved Sir3-BAH domain in nucleosome binding and silent chromatin assembly

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23874171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence for silencing compartments within the yeast nucleus: a role for telomere proximity and Sir protein concentration in silencer-mediated repression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23874171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003121

0 references

arXiv ID

1205.2571

0 references

DBLP publication ID

journals/ploscb/MukhopadhyayS13

1 reference

DBLP Dataset 2021-01-02