PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae (Q28280861)

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Ting-Cheng Su

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Pedro Lourenco

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Matthew Dahabieh

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Ivan Sadowski

Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis

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language of work or name

English

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publication date

2010

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published in

Database

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volume

2010

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issue

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page(s)

bap026

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cites work

1 reference

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TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II.

20 March 2017

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An in vivo map of the yeast protein interactome

20 March 2017

1 reference

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The BioGRID Interaction Database: 2008 update

20 March 2017

1 reference

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Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

20 March 2017

1 reference

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CDK Pho85 targets CDK inhibitor Sic1 to relieve yeast G1 checkpoint arrest after DNA damage

20 March 2017

1 reference

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Cdk1-dependent regulation of the mitotic inhibitor Wee1.

20 March 2017

1 reference

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Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network

20 March 2017

1 reference

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Hog1 mediates cell-cycle arrest in G1 phase by the dual targeting of Sic1.

20 March 2017

1 reference

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Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

20 March 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

20 March 2017

1 reference

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Global analysis of protein expression in yeast

20 March 2017

1 reference

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Global analysis of protein localization in budding yeast

20 March 2017

1 reference

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Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

20 March 2017

1 reference

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Mass spectrometry-based proteomics

20 March 2017

1 reference

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Osprey: a network visualization system

20 March 2017

1 reference

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Structural basis for phosphodependent substrate selection and orientation by the SCFCdc4 ubiquitin ligase

20 March 2017

1 reference

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The protein kinase complement of the human genome

20 March 2017

1 reference

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Evolution of protein kinase signaling from yeast to man

20 March 2017

1 reference

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Cdc5 influences phosphorylation of Net1 and disassembly of the RENT complex

20 March 2017

1 reference

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Regulation of the actin cytoskeleton organization in yeast by a novel serine/threonine kinase Prk1p

20 March 2017

1 reference

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The protein kinases of budding yeast: six score and more

20 March 2017

1 reference

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Comparative genomics and genome evolution in yeasts

20 March 2017

1 reference

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Global analysis of protein phosphorylation in yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

7 April 2017

1 reference

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The phosphatase Cdc14 triggers mitotic exit by reversal of Cdk-dependent phosphorylation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

7 April 2017

1 reference

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Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms

7 April 2017

1 reference

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Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

7 April 2017

1 reference

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Signaling--2000 and beyond

7 April 2017

1 reference

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Phosphorylation of Sic1p by G1 Cdk required for its degradation and entry into S phase

7 April 2017

1 reference

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Reading protein modifications with interaction domains

7 April 2017

1 reference

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Systematic Discovery of In Vivo Phosphorylation Networks

7 April 2017

1 reference

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Multisite protein phosphorylation--from molecular mechanisms to kinetic models

9 May 2017

1 reference

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Computational studies of protein regulation by post-translational phosphorylation.

29 September 2017

1 reference

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PhosphoPep--a database of protein phosphorylation sites in model organisms

29 September 2017

1 reference

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Cracking the RNA polymerase II CTD code

29 September 2017

1 reference

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Transcribing RNA polymerase II is phosphorylated at CTD residue serine-7.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

A brief introduction to the protein phosphatase families

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Regulation of the cell cycle by protein phosphatase 2A in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Genomics of the fungal kingdom: insights into eukaryotic biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Dynamic changes in protein-protein interaction and protein phosphorylation probed with amine-reactive isotope tag.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

A structural perspective of CTD function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Kinomics: methods for deciphering the kinome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Transcriptional networks: reverse-engineering gene regulation on a global scale

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Combining biological networks to predict genetic interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Association of Rad9 with double-strand breaks through a Mec1-dependent mechanism.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Global analysis of gene expression in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Mass spectrometry-based methods for phosphorylation site mapping of hyperphosphorylated proteins applied to Net1, a regulator of exit from mitosis in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

The origins of protein phosphorylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

The TOR kinases link nutrient sensing to cell growth

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

PhosphoBase: a database of phosphorylation sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Protein modification: phosphorylation on tyrosine residues

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Saccharomyces cerevisiae Ime2 phosphorylates Sic1 at multiple PXS/T sites but is insufficient to trigger Sic1 degradation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Phosphoregulation of Arp2/3-dependent actin assembly during receptor-mediated endocytosis

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Analysis of protein interactions between protein phosphatase 1 and noncatalytic subunits using the yeast two-hybrid assay

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

The cyclin family of budding yeast: abundant use of a good idea

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Life, logic and information.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

NetPhosYeast: prediction of protein phosphorylation sites in yeast.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

The Phosphorylation Site Database: A guide to the serine-, threonine-, and/or tyrosine-phosphorylated proteins in prokaryotic organisms

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

A systematic approach to the analysis of protein phosphorylation

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2860897

Rapamycin-mediated G1 arrest involves regulation of the Cdk inhibitor Sic1 in Saccharomyces cerevisiae

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20428315

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DATABASE/BAP026

1 reference

1 reference

1 reference

PubMed publication ID

20428315

1 reference