The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA (Q28288672)

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English	The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA	scientific article

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scholarly article

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title

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA (English)

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author

Sarah A Woodson

series ordinal

2

object named as

Sarah A Woodson

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author name string

Toby J Soper

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1

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language of work or name

English

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publication date

September 2008

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published in

RNA

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volume

14

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issue

9

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page(s)

1907-17

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cites work

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

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20 March 2017

Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites

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20 March 2017

Evaluation of the dynamic structure of DsrA RNA from E. coli and its functional consequences

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20 March 2017

Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA

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PubMed Central

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20 March 2017

Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs

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PubMed Central

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20 March 2017

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

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20 March 2017

Global analysis of small RNA and mRNA targets of Hfq

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PubMed Central

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20 March 2017

Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli

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PubMed Central

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20 March 2017

Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm

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20 March 2017

Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure

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PubMed Central

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20 March 2017

Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase

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PubMed Central

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20 March 2017

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

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PubMed Central

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20 March 2017

Regulation of RpoS by a novel small RNA: the characterization of RprA

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PubMed Central

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20 March 2017

Hfq is necessary for regulation by the untranslated RNA DsrA

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PubMed Central

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20 March 2017

Riboregulation by DsrA RNA: trans-actions for global economy

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PubMed Central

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20 March 2017

DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

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PubMed Central

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20 March 2017

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

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PubMed Central

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20 March 2017

Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene

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PubMed Central

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20 March 2017

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

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PubMed Central

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7 April 2017

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

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PubMed Central

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7 April 2017

The bacterial Sm-like protein Hfq: a key player in RNA transactions

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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7 April 2017

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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7 April 2017

The RNA binding protein Hfq interacts specifically with tRNAs.

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

The C-terminal domain of Escherichia coli Hfq is required for regulation

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Identification of bacterial small non-coding RNAs: experimental approaches

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PubMed Central

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29 September 2017

Hfq structure, function and ligand binding

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Small RNAs controlling outer membrane porins

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PubMed Central

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29 September 2017

Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA.

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Controlling mRNA stability and translation with small, noncoding RNAs

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

1 reference

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

RNA chaperone activity of the Sm-like Hfq protein

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

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stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Promoter substitution and deletion analysis of upstream region required for rpoS translational regulation.

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Altered 3′-terminal RNA structure in phage Qβ adapted to host factor-less Escherichia coli

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PubMed Central

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29 September 2017

Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimurium

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2525945

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29 September 2017

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

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PubMed Central

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29 September 2017

Site-specific interaction of Qbeta host factor and ribosomal protein S1 with Qbeta and R17 bacteriophage RNAs

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PubMed Central

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29 September 2017

Translational autocontrol of the Escherichia coli hfq RNA chaperone gene

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PubMed Central

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2 June 2018

Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli

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PubMed Central

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2 June 2018

Dissecting RNA chaperone activity

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PubMed Central

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27 November 2018

Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq.

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PubMed Central

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27 November 2018

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

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PubMed Central

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27 November 2018

Bacterial proteins required for replication of phage Q ribonucleic acid. Pruification and properties of host factor I, a ribonucleic acid-binding protein

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PubMed Central

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27 November 2018

Identifiers

DOI

10.1261/RNA.1110608

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PMC publication ID

2525945

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PubMed publication ID

18658123

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ResearchGate publication ID

51431164

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