The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies (Q27975975)

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English	The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies	scientific article (publication date: 11 February 2013)

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instance of

scholarly article

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title

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies (English)

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main subject

hackathon

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Semantic Web

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data integration

1 reference

based on heuristic

inferred from title

BioHackathon 2010

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DBCLS BioHackathon

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author

Naohisa Goto

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23

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Pjotr Prins

series ordinal

50

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Matthias Samwald

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52

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Arek Kasprzyk

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28

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Pierre Lindenbaum

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38

object named as

Pierre Lindenbaum

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Tore Eriksson

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Tore Eriksson

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21

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Ryosuke Ishiwata

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Ryosuke Ishiwata

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26

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Heiko Horn

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Heiko Horn

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25

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Venkata P Satagopam

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Venkata P Satagopam

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53

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Koji Nagao

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Koji Nagao

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42

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Erick Antezana

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Erick Antezana

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13

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Alberto Labarga

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Alberto Labarga

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35

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Shuichi Kawashima

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Shuichi Kawashima

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4

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Atsuko Yamaguchi

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Atsuko Yamaguchi

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Kazuharu Arakawa

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Kazuharu Arakawa

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James Taylor

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James Taylor

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Gos Micklem

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Gos Micklem

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Mark D. Wilkinson

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Mark D Wilkinson

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Hideya Kawaji

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Rutger Vos

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Katsuhiko Murakami

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Jerven Bolleman

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Jerven Bolleman

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Toshiaki Katayama

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Toshiaki Katayama

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Andrea Splendiani

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Andrea Splendiani

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Hammad Afzal

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Keiichiro Ono

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Keiichiro Ono

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Chisato Yamasaki

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Chisato Yamasaki

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Yasunori Yamamoto

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Yasunori Yamamoto

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Bruno Aranda

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Bruno Aranda

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Mitsuteru Nakao

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Shinobu Okamoto

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Kenta Oouchida

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Hong-Woo Chun

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Jan Aerts

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Francois Belleau

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Raoul Jp Bonnal

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Brad Chapman

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Peter Ja Cock

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Paul Mk Gordon

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Kazuhiro Hayashi

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Eli Kaminuma

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Nobuhiro Kido

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Young Joo Kim

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Akira R Kinjo

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Fumikazu Konishi

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Kyung-Hoon Kwon

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Anna-Lena Lamprecht

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Yu Lin

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Luke McCarthy

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Hideyuki Morita

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Kozo Nishida

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Kunihiro Nishimura

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Tatsuya Nishizawa

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Soichi Ogishima

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Kazuki Oshita

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Keun-Joon Park

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Taro L Saito

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Yasumasa Shigemoto

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Richard Smith

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Hideaki Sugawara

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David Withers

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Christian M Zmasek

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Shoko Kawamoto

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Kosaku Okubo

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Kiyoshi Asai

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Toshihisa Takagi

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language of work or name

English

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publication date

11 February 2013

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published in

Journal of Biomedical Semantics

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Crossref

volume

4

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issue

1

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page(s)

6

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describes a project that uses

SQL

1 reference

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Europe PubMed Central

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26 June 2022

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https://europepmc.org/article/PMC/PMC3598643

based on heuristic

inferred from PubMed Central ID database lookup

Cytoscape

object named as

Cytoscape

1 reference

stated in

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Linked open drug data for pharmaceutical research and development

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

DDBJ progress report

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Ensembl 2011

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

The BioPAX community standard for pathway data sharing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

BioRuby: bioinformatics software for the Ruby programming language

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

KEGG for representation and analysis of molecular networks involving diseases and drugs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Biopython: freely available Python tools for computational molecular biology and bioinformatics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

iRefIndex: a consolidated protein interaction database with provenance

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Microbial ecology: human gut microbes associated with obesity

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

A comprehensive pathway map of epidermal growth factor receptor signaling

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

SNOMED clinical terms: overview of the development process and project status

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Gene ontology: tool for the unification of biology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

GALEN ten years on: tasks and supporting tools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Ontologies as integrative tools for plant science

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

The BioGRID Interaction Database: 2011 update

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Reactome: a database of reactions, pathways and biological processes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Taverna: a tool for building and running workflows of services

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Controlled vocabularies and semantics in systems biology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

The IntAct molecular interaction database in 2010

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Initial implementation of a comparative data analysis ontology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

20 March 2017

Cytoscape 2.8: new features for data integration and network visualization

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

7 April 2017

UniProt Knowledgebase: a hub of integrated protein data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

7 April 2017

MINT, the molecular interaction database: 2009 update

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

7 April 2017

BioMart--biological queries made easy

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

7 April 2017

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

The UCSC Genome Browser database: extensions and updates 2011.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

modMine: flexible access to modENCODE data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

SADI, SHARE, and the in silico scientific method

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

MatrixDB, the extracellular matrix interaction database

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

G-language genome analysis environment with REST and SOAP web service interfaces

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Bio-jETI: a framework for semantics-based service composition

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

BioGateway: a semantic systems biology tool for the life sciences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Biological knowledge management: the emerging role of the Semantic Web technologies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

RDFScape: Semantic Web meets systems biology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Text processing through Web services: calling Whatizit

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Ontology-based modeling of clinical practice guidelines: a clinical decision support system for breast cancer follow-up interventions at primary care settings

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

FlyMine: an integrated database for Drosophila and Anopheles genomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS).

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Text mining and its potential applications in systems biology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

Biodiversity informatics: managing and applying primary biodiversity data

2 references

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598643

retrieved

29 September 2017

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1186%2F2041-1480-4-6

retrieved

21 January 2018

Molecular dynamics simulation studies and in vitro site directed mutagenesis of avian beta-defensin Apl_AvBD2.

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1186%2F2041-1480-4-6

retrieved

21 January 2018

Triplet supertree heuristics for the tree of life

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1186%2F2041-1480-4-6

retrieved

21 January 2018

Simultaneous phylogeny reconstruction and multiple sequence alignment

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1186%2F2041-1480-4-6

retrieved

21 January 2018

MPIDB: the microbial protein interaction database

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1186%2F2041-1480-4-6

retrieved

21 January 2018

Identifiers

DOI

10.1186/2041-1480-4-6

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

854585

DBLP publication ID

journals/biomedsem/X13

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

Dimensions Publication ID

1016886003

1 reference

stated in

SciGraph

retrieved

9 September 2019

reference URL

https://scigraph.springernature.com/pub.10.1186/2041-1480-4-6

OpenCitations bibliographic resource ID

854585

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

854585

PMC publication ID

3598643

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

854585

PubMed publication ID

23398680

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

854585

ResearchGate publication ID

235520177

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