Analyzing and interpreting genome data at the network level with ConsensusPathDB (Q27887656)

https://api.crossref.org/works/10.1038/NPROT.2016.117

Estimating the size of the human interactome

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Pathguide: a pathway resource list

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Phospho-tyrosine dependent protein-protein interaction network

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

High-density genotyping of immune-related loci identifies new SLE risk variants in individuals with Asian ancestry

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Chipster: user-friendly analysis software for microarray and other high-throughput data

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Integration of biological networks and gene expression data using Cytoscape

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Pathway Commons, a web resource for biological pathway data

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

A comprehensive pathway map of epidermal growth factor receptor signaling

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Data, information, knowledge and principle: back to metabolism in KEGG

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Geometric de-noising of protein-protein interaction networks

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

ConsensusPathDB: toward a more complete picture of cell biology

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Temporal regulation of EGF signalling networks by the scaffold protein Shc1

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

Hallmarks of Cancer: The Next Generation

21 April 2017

1 reference

https://api.crossref.org/works/10.1038/NPROT.2016.117

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

21 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Ten years of pathway analysis: current approaches and outstanding challenges

21 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Gene Ontology Consortium: going forward

21 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Interactome networks and human disease

21 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

21 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

A travel guide to Cytoscape plugins

21 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Comprehensive molecular profiling of lung adenocarcinoma

21 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Gene set analysis methods: statistical models and methodological differences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Dynamic modularity in protein interaction networks predicts breast cancer outcome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

ConsensusPathDB--a database for integrating human functional interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Multiple haplotype-resolved genomes reveal population patterns of gene and protein diplotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Analysis of loss-of-function variants and 20 risk factor phenotypes in 8,554 individuals identifies loci influencing chronic disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

STAT3 expression, activity and functional consequences of STAT3 inhibition in esophageal squamous cell carcinomas and Barrett's adenocarcinomas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Network-based stratification of tumor mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Human embryonic stem cell derived hepatocyte-like cells as a tool for in vitro hazard assessment of chemical carcinogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Causal analysis approaches in Ingenuity Pathway Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Molecular signatures database (MSigDB) 3.0.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Review on uremic toxins: classification, concentration, and interindividual variability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

The Reactome pathway Knowledgebase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Cluster-based assessment of protein-protein interaction confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Assessing experimentally derived interactions in a small world

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

The ConsensusPathDB interaction database: 2013 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

IntScore: a web tool for confidence scoring of biological interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Primary differentiation in the human blastocyst: comparative molecular portraits of inner cell mass and trophectoderm cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Structural basis for inhibition of the epidermal growth factor receptor by cetuximab

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Effects of uremic toxins on transport and metabolism of different biopharmaceutics drug disposition classification system xenobiotics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

p-Cresyl sulfate, a uremic toxin, causes vascular endothelial and smooth muscle cell damages by inducing oxidative stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117

Human pre-implantation embryo development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2016.117