The structural basis for membrane binding and pore formation by lymphocyte perforin (Q27665482)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	The structural basis for membrane binding and pore formation by lymphocyte perforin	scientific article

Statements

instance of

scholarly article

0 references

title

The structural basis for membrane binding and pore formation by lymphocyte perforin (English)

0 references

main subject

lymphocyte

0 references

Perforin 1

1 reference

stated in

GOA release 2020-03-11

identical protein binding

1 reference

stated in

GOA release 2020-03-11

Perforin 1 (pore forming protein)

1 reference

stated in

GOA release 2020-03-11

author

James C Whisstock

series ordinal

17

0 references

Michael E D'Angelo

object named as

Michael E D'Angelo

series ordinal

7

0 references

Fasséli Coulibaly

object named as

Fasséli Coulibaly

series ordinal

9

0 references

Elena V. Orlova

object named as

Elena V Orlova

series ordinal

8

0 references

Phillip I. Bird

object named as

Phillip I Bird

series ordinal

14

0 references

Joseph A. Trapani

object named as

Joseph A Trapani

series ordinal

15

0 references

Helen Saibil

series ordinal

16

object named as

Helen R Saibil

0 references

author name string

Ruby H P Law

series ordinal

1

0 references

Natalya Lukoyanova

series ordinal

2

0 references

Ilia Voskoboinik

series ordinal

3

0 references

Tom T Caradoc-Davies

series ordinal

4

0 references

Katherine Baran

series ordinal

5

0 references

Michelle A Dunstone

series ordinal

6

0 references

Sandra Verschoor

series ordinal

10

0 references

Kylie A Browne

series ordinal

11

0 references

Annette Ciccone

series ordinal

12

0 references

Michael J Kuiper

series ordinal

13

0 references

language of work or name

English

0 references

publication date

18 November 2010

0 references

published in

Nature

0 references

volume

468

0 references

issue

7322

0 references

page(s)

447-51

0 references

cites work

EMAN: semiautomated software for high-resolution single-particle reconstructions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition and separation of single particles with size variation by statistical analysis of their images

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Features and development of Coot

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WHAT IF: a molecular modeling and drug design program

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Scaling and assessment of data quality

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The domains of a cholesterol-dependent cytolysin undergo a major FRET-detected rearrangement during pore formation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ninth component of complement and the pore-forming protein (perforin 1) from cytotoxic T cells: structural, immunological, and functional similarities

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytolytic T-cell cytotoxicity is mediated through perforin and Fas lytic pathways

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Electron microscopic demonstration of lesions in target cell membranes associated with antibody-dependent cellular cytotoxicity

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Buccaneer software for automated model building. 1. Tracing protein chains

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Experimental phasing with SHELXC/D/E: combining chain tracing with density modification

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Perforin, a pore-forming protein detectable by monoclonal antibodies, is a functional marker for killer cells

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Methods used in the structure determination of bovine mitochondrial F1 ATPase

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of a cholesterol-binding, thiol-activated cytolysin and a model of its membrane form

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UCSF Chimera--a visualization system for exploratory research and analysis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Perforin-mediated target-cell death and immune homeostasis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a Membrane-Spanning Domain of the Thiol-Activated Pore-Forming ToxinClostridium perfringensPerfringolysin O: An α-Helical to β-Sheet Transition Identified by Fluorescence Spectroscopy†

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Density modification for macromolecular phase improvement

2 references

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FNATURE09518

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Homology of perforin to the ninth component of complement (C9).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prepore to pore transition of a cholesterol-dependent cytolysin visualized by electron microscopy

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Scalable molecular dynamics with NAMD

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis of pore formation by the bacterial toxin pneumolysin

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of C8alpha-MACPF reveals mechanism of membrane attack in complement immune defense

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression and purification of recombinant human granzyme B from Pichia pastoris

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional channel formation associated with cytotoxic T-cell granules

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MRC image processing programs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cationic sites on granzyme B contribute to cytotoxicity by promoting its uptake into target cells

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular basis for perforin oligomerization and transmembrane pore assembly

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PHENIX: a comprehensive Python-based system for macromolecular structure solution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Munc13 C2B domain is an activity-dependent Ca2+ regulator of synaptic exocytosis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A common fold mediates vertebrate defense and bacterial attack

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Calcium-dependent plasma membrane binding and cell lysis by perforin are mediated through its C2 domain: A critical role for aspartate residues 429, 435, 483, and 485 but not 491.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional assessment of perforin C2 domain mutations illustrates the critical role for calcium-dependent lipid binding in perforin cytotoxic function

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vertical collapse of a cytolysin prepore moves its transmembrane beta-hairpins to the membrane

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MUSTANG: a multiple structural alignment algorithm

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new generation of the IMAGIC image processing system

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CCP4 suite: programs for protein crystallography

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and biochemical and functional characterization of perforin 1 from cytolytic T-cell granules

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytotoxicity mediated by T cells and natural killer cells is greatly impaired in perforin-deficient mice

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Perforin activates clathrin- and dynamin-dependent endocytosis, which is required for plasma membrane repair and delivery of granzyme B for granzyme-mediated apoptosis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional domains of the alpha subunit of the eighth component of human complement: identification and characterization of a distinct binding site for the gamma chain

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and function of human perforin

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Measuring cell death mediated by cytotoxic lymphocytes or their granule effector molecules.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the MACPF domain of human complement protein C8 alpha in complex with the C8 gamma subunit

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural/functional similarity between proteins involved in complement- and cytotoxic T-lymphocyte-mediated cytolysis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

XDS

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated structure solution with autoSHARP

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Similarity between C2 domain jaws and immunoglobulin CDRs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Mechanism of Membrane Insertion for a Cholesterol-Dependent Cytolysin

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signaling and subcellular targeting by membrane-binding domains

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21037563

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FNATURE09518

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE09518

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1851137

Dimensions Publication ID

1051929930

0 references

OpenCitations bibliographic resource ID

1851137

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1851137

PubMed publication ID

21037563

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1851137

ResearchGate publication ID

47636259

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q27665482&oldid=2175336134"