U4/U6-U5 snRNP complex subunit LSM6 YDR378C (Q27552346)

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fungal protein found in Saccharomyces cerevisiae S288c

• YDR378C
• U4/U6-U5 snRNP complex subunit LSM6
• LSM6

edit

Language	Label	Description	Also known as
English	U4/U6-U5 snRNP complex subunit LSM6 YDR378C	fungal protein found in Saccharomyces cerevisiae S288c	YDR378C U4/U6-U5 snRNP complex subunit LSM6 LSM6

Statements

instance of

protein

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

Q06406

subclass of

protein

1 reference

stated in

NCBI Gene

retrieved

10 December 2016

Entrez Gene ID

851984

found in taxon

Saccharomyces cerevisiae S288c

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

Q06406

encoded by

LSM6

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

Q06406

molecular function

RNA binding

determination method or standard

IPI

IEA

IDA

3 references

retrieved

14 February 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

retrieved

14 February 2019

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

protein binding

determination method or standard

IPI

8 references

retrieved

9 May 2019

stated in

High-quality binary protein interaction map of the yeast interactome network

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

An in vivo map of the yeast protein interactome

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

A comprehensive two-hybrid analysis to explore the yeast protein interactome

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

Proteome-wide protein interaction measurements of bacterial proteins of unknown function

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

Proteome survey reveals modularity of the yeast cell machinery

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

RNA binding

determination method or standard

IDA

IEA

3 references

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

retrieved

9 May 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

9 May 2019

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

cell component

U6 snRNP

determination method or standard

IDA

2 references

retrieved

27 March 2018

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000002786

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

27 March 2018

stated in

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

GOA

curator

SGD

Saccharomyces Genome Database ID

S000002786

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IDA

spliceosomal complex

determination method or standard

IEA

1 reference

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

cytoplasm

determination method or standard

IEA

1 reference

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

nucleus

determination method or standard

IEA

1 reference

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

P-body

determination method or standard

IDA

1 reference

retrieved

27 March 2018

stated in

A role for Q/N-rich aggregation-prone regions in P-body localization.

GOA

curator

SGD

Saccharomyces Genome Database ID

S000002786

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IDA

Lsm1-7-Pat1 complex

determination method or standard

IDA

1 reference

retrieved

9 May 2019

stated in

Architecture of the Lsm1-7-Pat1 complex: a conserved assembly in eukaryotic mRNA turnover

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

U4/U6 x U5 tri-snRNP complex

determination method or standard

IDA

2 references

retrieved

27 March 2018

stated in

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

GOA

curator

SGD

Saccharomyces Genome Database ID

S000002786

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

27 March 2018

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

Saccharomyces Genome Database ID

S000002786

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IDA

nucleolus

determination method or standard

IEA

IDA

2 references

retrieved

27 March 2018

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IEA

retrieved

27 March 2018

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

Saccharomyces Genome Database ID

S000002786

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IDA

sno(s)RNA-containing ribonucleoprotein complex

determination method or standard

IEA

IPI

2 references

retrieved

9 May 2019

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

P-body

determination method or standard

IBA

IDA

2 references

retrieved

9 May 2019

stated in

A role for Q/N-rich aggregation-prone regions in P-body localization.

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

9 May 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IBA

U6 snRNP

determination method or standard

IBA

IDA

3 references

retrieved

9 May 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

9 May 2019

stated in

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

9 May 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IBA

nucleolus

determination method or standard

IBA

IDA

IEA

3 references

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

retrieved

9 May 2019

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

9 May 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IBA

sno(s)RNA-containing ribonucleoprotein complex

determination method or standard

IBA

IEA

IPI

3 references

retrieved

10 September 2018

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

10 September 2018

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IEA

retrieved

10 September 2018

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IBA

U4/U6 x U5 tri-snRNP complex

determination method or standard

IBA

IDA

3 references

retrieved

9 May 2019

stated in

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

9 May 2019

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IDA

retrieved

9 May 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IBA

biological process

mRNA processing

determination method or standard

IEA

1 reference

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

maturation of SSU-rRNA

determination method or standard

IMP

1 reference

retrieved

27 March 2018

stated in

Rational extension of the ribosome biogenesis pathway using network-guided genetics

GOA

curator

SGD

Saccharomyces Genome Database ID

S000002786

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IMP

RNA splicing

determination method or standard

IEA

1 reference

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

tRNA processing

determination method or standard

IEA

1 reference

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

rRNA processing

determination method or standard

IEA

1 reference

retrieved

9 May 2019

stated in

GOA

curator

UniProt

UniProt protein ID

Q06406

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

mRNA splicing, via spliceosome

determination method or standard

IEA

IPI

2 references

retrieved

9 May 2019

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

9 May 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IEA

mRNA splicing, via spliceosome

determination method or standard

IBA

IEA

IPI

3 references

retrieved

10 September 2018

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IPI

retrieved

10 September 2018

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IEA

retrieved

10 September 2018

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=Q06406&geneProductId=UniProtKB:Q06406

determination method or standard

IBA

maturation of SSU-rRNA

determination method or standard

IBA

IMP

2 references

retrieved

9 May 2019

stated in

Rational extension of the ribosome biogenesis pathway using network-guided genetics

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IMP

retrieved

9 May 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q06406

determination method or standard

IBA

Identifiers

RefSeq protein ID

NP_010666

1 reference

stated in

NCBI Gene

retrieved

20 March 2022

Entrez Gene ID

851984

UniProt protein ID

Q06406

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

Q06406

Ensembl protein ID

YDR378C

1 reference

stated in

ensembl Release 106

Ensembl protein ID

YDR378C

Saccharomyces Genome Database ID

S000002786

1 reference

stated in

NCBI Gene

retrieved

20 March 2022

Entrez Gene ID

851984

 

Sitelinks

Wikipedia(0 entries)

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Wikibooks(0 entries)

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Wikinews(0 entries)

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Wikiquote(0 entries)

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Wikisource(0 entries)

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Wikiversity(0 entries)

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Wikivoyage(0 entries)

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Wiktionary(0 entries)

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Multilingual sites(0 entries)

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