U4/U6-U5 snRNP complex subunit LSM8 YJR022W (Q27551670)

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fungal protein found in Saccharomyces cerevisiae S288c

• YJR022W
• LSM8
• U4/U6-U5 snRNP complex subunit LSM8

edit

Language	Label	Description	Also known as
English	U4/U6-U5 snRNP complex subunit LSM8 YJR022W	fungal protein found in Saccharomyces cerevisiae S288c	YJR022W LSM8 U4/U6-U5 snRNP complex subunit LSM8

Statements

instance of

protein

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P47093

subclass of

protein

1 reference

stated in

NCBI Gene

retrieved

10 December 2016

Entrez Gene ID

853479

part of

LSM domain superfamily

1 reference

stated in

InterPro Release 71.0

reference URL

http://www.ebi.ac.uk/interpro/protein/P47093

LSM domain, eukaryotic/archaea-type, protein family

1 reference

based on heuristic

inferred from protein domain or family

Sm-like protein Lsm8 family

1 reference

based on heuristic

inferred from protein domain or family

found in taxon

Saccharomyces cerevisiae S288c

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P47093

encoded by

LSM8

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P47093

molecular function

RNA binding

determination method or standard

IEA

IDA

3 references

retrieved

27 March 2018

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

27 March 2018

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

27 March 2018

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IDA

protein binding

determination method or standard

IPI

8 references

retrieved

14 February 2019

stated in

Rapid screening of yeast mutants with reporters identifies new splicing phenotypes

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

Proteome-wide protein interaction measurements of bacterial proteins of unknown function

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

Proteome survey reveals modularity of the yeast cell machinery

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

An in vivo map of the yeast protein interactome

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

RNA binding

determination method or standard

IBA

IDA

IEA

4 references

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

14 February 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

14 February 2019

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

14 February 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IBA

cell component

spliceosomal complex

determination method or standard

IEA

1 reference

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

cytoplasm

determination method or standard

IEA

1 reference

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

nucleus

determination method or standard

IEA

IDA

2 references

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

14 February 2019

stated in

Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

nucleolus

determination method or standard

IDA

1 reference

retrieved

14 February 2019

stated in

Requirements for nuclear localization of the Lsm2-8p complex and competition between nuclear and cytoplasmic Lsm complexes

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

U6 snRNP

determination method or standard

IDA

IEA

3 references

retrieved

27 March 2018

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

27 March 2018

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

27 March 2018

stated in

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IDA

U4/U6 x U5 tri-snRNP complex

determination method or standard

IDA

IEA

3 references

retrieved

27 March 2018

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

27 March 2018

stated in

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

27 March 2018

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IDA

precatalytic spliceosome

determination method or standard

IBA

1 reference

retrieved

27 March 2018

stated in

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IBA

U6 snRNP

determination method or standard

IBA

IDA

IEA

4 references

retrieved

14 February 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

14 February 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

14 February 2019

stated in

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

14 February 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IBA

U4/U6 x U5 tri-snRNP complex

determination method or standard

IBA

IDA

IEA

4 references

retrieved

14 February 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

14 February 2019

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

14 February 2019

stated in

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IDA

retrieved

14 February 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IBA

biological process

mRNA processing

determination method or standard

IEA

1 reference

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

RNA splicing

determination method or standard

IEA

1 reference

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

tRNA processing

determination method or standard

IEA

1 reference

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

rRNA processing

determination method or standard

IEA

1 reference

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P47093

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

mRNA splicing, via spliceosome

determination method or standard

IEA

IPI

2 references

retrieved

14 February 2019

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

14 February 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IEA

mRNA splicing, via spliceosome

determination method or standard

IBA

IEA

IPI

3 references

retrieved

7 November 2018

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

Saccharomyces Genome Database ID

S000003783

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IPI

retrieved

7 November 2018

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IEA

retrieved

7 November 2018

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P47093&geneProductId=UniProtKB:P47093

determination method or standard

IBA

RNA metabolic process

determination method or standard

IBA

1 reference

retrieved

14 February 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P47093

determination method or standard

IBA

has part(s)

LSM domain, eukaryotic/archaea-type

1 reference

stated in

InterPro Release 71.0

reference URL

http://www.ebi.ac.uk/interpro/protein/P47093

Sm-like protein Lsm8

1 reference

stated in

InterPro Release 71.0

reference URL

http://www.ebi.ac.uk/interpro/protein/P47093

Identifiers

RefSeq protein ID

NP_012556

1 reference

stated in

NCBI Gene

retrieved

20 March 2022

Entrez Gene ID

853479

UniProt protein ID

P47093

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P47093

Ensembl protein ID

YJR022W

1 reference

stated in

ensembl Release 106

Ensembl protein ID

YJR022W

Saccharomyces Genome Database ID

S000003783

1 reference

stated in

NCBI Gene

retrieved

20 March 2022

Entrez Gene ID

853479

 

Sitelinks

Wikipedia(0 entries)

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Wikibooks(0 entries)

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Wikinews(0 entries)

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Wikiquote(0 entries)

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Wikisource(0 entries)

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Wikiversity(0 entries)

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Wikivoyage(0 entries)

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Wiktionary(0 entries)

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Multilingual sites(0 entries)

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