U4/U6-U5 snRNP complex subunit LSM3 YLR438C-A (Q27549919)

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fungal protein found in Saccharomyces cerevisiae S288c

• U4/U6-U5 snRNP complex subunit LSM3
• YLR438C-A
• LSM3

edit

Language	Label	Description	Also known as
English	U4/U6-U5 snRNP complex subunit LSM3 YLR438C-A	fungal protein found in Saccharomyces cerevisiae S288c	U4/U6-U5 snRNP complex subunit LSM3 YLR438C-A LSM3

Statements

instance of

protein

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P57743

subclass of

protein

1 reference

stated in

NCBI Gene

retrieved

10 December 2016

Entrez Gene ID

851159

found in taxon

Saccharomyces cerevisiae S288c

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P57743

encoded by

LSM3

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P57743

molecular function

RNA binding

determination method or standard

IPI

IEA

2 references

retrieved

27 March 2018

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

27 March 2018

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IEA

protein binding

determination method or standard

IPI

5 references

retrieved

8 April 2019

stated in

An in vivo map of the yeast protein interactome

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

8 April 2019

stated in

Proteome survey reveals modularity of the yeast cell machinery

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

8 April 2019

stated in

Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

8 April 2019

stated in

Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

8 April 2019

stated in

High-quality binary protein interaction map of the yeast interactome network

GOA

curator

IntAct protein interaction database

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

RNA binding

determination method or standard

IBA

IEA

IPI

4 references

retrieved

14 February 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

14 February 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

retrieved

14 February 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

retrieved

14 February 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

RNA binding

determination method or standard

IBA

IDA

IEA

4 references

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

retrieved

8 April 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

retrieved

8 April 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IDA

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

cell component

U6 snRNP

determination method or standard

IDA

2 references

retrieved

27 March 2018

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IDA

retrieved

27 March 2018

stated in

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IDA

spliceosomal complex

determination method or standard

IEA

1 reference

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

catalytic step 2 spliceosome

determination method or standard

IBA

1 reference

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

P-body

determination method or standard

IBA

1 reference

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

nucleolus

determination method or standard

IDA

1 reference

retrieved

8 April 2019

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IDA

sno(s)RNA-containing ribonucleoprotein complex

determination method or standard

IPI

1 reference

retrieved

8 April 2019

stated in

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

Lsm1-7-Pat1 complex

determination method or standard

IDA

1 reference

retrieved

27 March 2018

stated in

Architecture of the Lsm1-7-Pat1 complex: a conserved assembly in eukaryotic mRNA turnover

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IDA

U4/U6 x U5 tri-snRNP complex

determination method or standard

IDA

1 reference

retrieved

27 March 2018

stated in

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IDA

precatalytic spliceosome

determination method or standard

IBA

1 reference

retrieved

27 March 2018

stated in

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IBA

nucleus

determination method or standard

IEA

1 reference

retrieved

7 November 2018

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IEA

cytoplasm

determination method or standard

IEA

1 reference

retrieved

7 November 2018

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IEA

U6 snRNP

determination method or standard

IBA

IDA

3 references

retrieved

8 April 2019

stated in

Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IDA

retrieved

8 April 2019

stated in

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IDA

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

U4/U6 x U5 tri-snRNP complex

determination method or standard

IBA

IDA

2 references

retrieved

8 April 2019

stated in

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IDA

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

Lsm1-7-Pat1 complex

determination method or standard

IBA

IDA

2 references

retrieved

8 April 2019

stated in

Architecture of the Lsm1-7-Pat1 complex: a conserved assembly in eukaryotic mRNA turnover

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IDA

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

nucleus

determination method or standard

HDA

IEA

2 references

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

retrieved

8 April 2019

stated in

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

HDA

cytoplasm

determination method or standard

HDA

IEA

2 references

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

retrieved

8 April 2019

stated in

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

HDA

biological process

mRNA processing

determination method or standard

IEA

1 reference

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

P-body assembly

determination method or standard

IBA

1 reference

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

RNA splicing

determination method or standard

IEA

1 reference

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

tRNA processing

determination method or standard

IEA

1 reference

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

rRNA processing

determination method or standard

IEA

1 reference

retrieved

8 April 2019

stated in

GOA

curator

UniProt

UniProt protein ID

P57743

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

mRNA splicing, via spliceosome

determination method or standard

IEA

IPI

2 references

retrieved

27 March 2018

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

27 March 2018

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?protein=P57743&geneProductId=UniProtKB:P57743

determination method or standard

IEA

nuclear-transcribed mRNA catabolic process

determination method or standard

IEA

1 reference

retrieved

8 April 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

mRNA splicing, via spliceosome

determination method or standard

IBA

IEA

IPI

3 references

retrieved

8 April 2019

stated in

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

GOA

curator

SGD

Saccharomyces Genome Database ID

S000006434

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IPI

retrieved

8 April 2019

stated in

GOA

curator

InterPro

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IEA

retrieved

8 April 2019

stated in

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

GOA

curator

GO Central

reference URL

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P57743

determination method or standard

IBA

Identifiers

RefSeq protein ID

NP_013543

1 reference

stated in

NCBI Gene

retrieved

20 March 2022

Entrez Gene ID

851159

UniProt protein ID

P57743

1 reference

stated in

UniProt

retrieved

25 May 2022

UniProt protein ID

P57743

Ensembl protein ID

YLR438C-A

1 reference

stated in

ensembl Release 106

Ensembl protein ID

YLR438C-A

Saccharomyces Genome Database ID

S000006434

1 reference

stated in

NCBI Gene

retrieved

20 March 2022

Entrez Gene ID

851159

 

Sitelinks

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Wikiquote(0 entries)

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Wikisource(0 entries)

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Wikiversity(0 entries)

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Wikivoyage(0 entries)

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