Decrypting the sequence of structural events during the gating transition of pentameric ligand-gated ion channels based on an interpolated elastic network model (Q27334133)

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scientific article (publication date: 2011)

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English	Decrypting the sequence of structural events during the gating transition of pentameric ligand-gated ion channels based on an interpolated elastic network model	scientific article (publication date: 2011)

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Decrypting the sequence of structural events during the gating transition of pentameric ligand-gated ion channels based on an interpolated elastic network model (English)

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Wenjun Zheng

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Anthony Auerbach

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2011

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PLOS Computational Biology

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e1001046

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Creative Commons Attribution 4.0 International

6 January 2011

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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10.1371/JOURNAL.PCBI.1001046

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