Large-scale chromatin organization: the good, the surprising, and the still perplexing (Q26830921)

Current Opinion in Cell Biology

published in

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69-78

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Domain-wide regulation of gene expression in the human genome

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Genome architecture: domain organization of interphase chromosomes

28 September 2017

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Chromosomal domains: epigenetic contexts and functional implications of genomic compartmentalization

28 September 2017

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Chromatin structure outside and inside the nucleus

28 September 2017

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28 September 2017

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A misplaced lncRNA causes brachydactyly in humans

28 September 2017

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Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

28 September 2017

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Iterative correction of Hi-C data reveals hallmarks of chromosome organization

28 September 2017

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The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives fo

28 September 2017

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Revisiting higher-order and large-scale chromatin organization

28 September 2017

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Chromatin organization - the 30 nm fiber

28 September 2017

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Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure

28 September 2017

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Three-dimensional folding and functional organization principles of the Drosophila genome

28 September 2017

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Chromosome organization in the nucleus - charting new territory across the Hi-Cs

28 September 2017

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A decade of 3C technologies: insights into nuclear organization

28 September 2017

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Enhancer and promoter interactions-long distance calls

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Unravelling global genome organization by 3C-seq

28 September 2017

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Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements

28 September 2017

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Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment.

28 September 2017

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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

28 September 2017

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

28 September 2017

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Chromatin structure: does the 30-nm fibre exist in vivo?

28 September 2017

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Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

28 September 2017

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Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions

28 September 2017

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Large-scale chromatin structure of inducible genes: transcription on a condensed, linear template.

28 September 2017

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P-STAT1 mediates higher-order chromatin remodelling of the human MHC in response to IFNgamma

28 September 2017

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Visualization of early chromosome condensation: a hierarchical folding, axial glue model of chromosome structure

28 September 2017

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Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH).

28 September 2017

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Large-scale chromatin decondensation and recondensation regulated by transcription from a natural promoter

28 September 2017

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Analysis of mammalian central nervous system gene expression and function using bacterial artificial chromosome-mediated transgenesis

28 September 2017

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Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain

28 September 2017

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Electron spectroscopic imaging of chromatin

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Spatial and temporal dynamics of DNA replication sites in mammalian cells

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Visualization of G1 chromosomes: a folded, twisted, supercoiled chromonema model of interphase chromatid structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Three-dimensional organization of Drosophila melanogaster interphase nuclei. II. Chromosome spatial organization and gene regulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Insights into interphase large-scale chromatin structure from analysis of engineered chromosome regions

31 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Chromosome structure in four wild-type polytene tissues of Drosophila melanogaster. The 87A and 87C heat shock loci are induced unequally in the midgut in a manner dependent on growth temperature.

31 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Large-scale chromatin structural domains within mitotic and interphase chromosomes in vivo and in vitro

31 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

The fixation of nuclei and chromosomes.

31 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Immunostaining of DNA in electron microscopy: an amplification and staining procedure for thin sections as alternative to gold labeling.

31 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

A detailed protocol for formaldehyde-assisted isolation of regulatory elements (FAIRE).

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

In vivo immunogold labeling confirms large-scale chromatin folding motifs.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

The facultative heterochromatin of the inactive X chromosome has a distinctive condensed ultrastructure.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Manipulating the mouse genome to engineer precise functional syntenic replacements with human sequence

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Synthesis of a more stable osmium ammine electron-dense DNA stain

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3927141

Localisation of rapidly and slowly labelled nuclear RNA as visualized by high resolution autoradiography

28 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24529248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A specific ultrastructural method to reveal DNA: the NAMA-Ur

1 reference

https://pubmed.ncbi.nlm.nih.gov/24529248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Replicon clusters may form structurally stable complexes of chromatin and chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24529248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CEB.2013.10.002

1 reference

1 reference

1 reference

PubMed publication ID

24529248

1 reference