A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria (Q25255909)

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English	A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria (English)

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Europe PubMed Central

PubMed publication ID

6 July 2017

object named as

Hong-Yu Ou

1

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Roy R Chaudhuri

object named as

Roy R Chaudhuri

4

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Michael R Barer

object named as

Michael R Barer

10

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Jay C. D. Hinton

object named as

Jay Hinton

8

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object named as

Mark Pallen

9

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author name string

Ling-Ling Chen

2

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Europe PubMed Central

PubMed publication ID

6 July 2017

James Lonnen

3

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Europe PubMed Central

PubMed publication ID

6 July 2017

Ali Bin Thani

5

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Europe PubMed Central

PubMed publication ID

6 July 2017

Rebecca Smith

6

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

Natalie J Garton

7

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Europe PubMed Central

PubMed publication ID

6 July 2017

Kumar Rajakumar

11

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Europe PubMed Central

PubMed publication ID

6 July 2017

language of work or name

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publication date

9 January 2006

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6 July 2017

Nucleic Acids Research

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Europe PubMed Central

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6 July 2017

34

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Europe PubMed Central

PubMed publication ID

6 July 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

e3

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Multiple sequence alignment with the Clustal series of programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

The Bioperl toolkit: Perl modules for the life sciences

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7 April 2017

Microbial gene identification using interpolated Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

The complete genome sequence of Escherichia coli K-12

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

A systematic method to identify genomic islands and its applications in analyzing the genomes of Corynebacterium glutamicum and Vibrio vulnificus CMCP6 chromosome I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Mauve: multiple alignment of conserved genomic sequence with rearrangements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

ACT: the Artemis Comparison Tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

7 April 2017

Recent developments in computational approaches for uncovering genomic homology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Genomic islands in pathogenic and environmental microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Pathogenicity islands and the evolution of microbes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Transfer RNAs and pathogenicity islands.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Sequence mapping by electronic PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 September 2017

Primaclade--a flexible tool to find conserved PCR primers across multiple species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 November 2018

IslandPath: aiding detection of genomic islands in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326021

28 November 2018

Identification of a unique IAHP (IcmF associated homologous proteins) cluster in Vibrio cholerae and other proteobacteria through in silico analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16414954

12 December 2020

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10.1093/NAR/GNJ005

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

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Europe PubMed Central

PubMed publication ID

6 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 July 2017

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