Probabilistic annotation of protein sequences based on functional classifications. (Q25255113)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16354297%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Probabilistic annotation of protein sequences based on functional classifications (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16354297%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16354297%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Emmanuel D Levy

1 reference

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10 January 2020

Christos A Ouzounis

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10 January 2020

Walter R Gilks

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10 January 2020

language of work or name

English

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publication date

14 December 2005

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10 January 2020

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10 January 2020

volume

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10 January 2020

issue

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page(s)

302

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10 January 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Can sequence determine function?

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Gene ontology: tool for the unification of biology

7 April 2017

1 reference

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The ENZYME database in 2000

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Basic local alignment search tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Mapping the protein universe

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

The COG database: a tool for genome-scale analysis of protein functions and evolution

7 April 2017

1 reference

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PROSITE: a documented database using patterns and profiles as motif descriptors

7 April 2017

1 reference

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Two glyceraldehyde-3-phosphate dehydrogenases with opposite physiological roles in a nonphotosynthetic bacterium

7 April 2017

1 reference

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Classifying G-protein coupled receptors with support vector machines

7 April 2017

1 reference

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Hidden Markov models in computational biology. Applications to protein modeling

7 April 2017

1 reference

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Rapid and sensitive sequence comparison with FASTP and FASTA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Alignment-free sequence comparison-a review

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Intrinsic errors in genome annotation

28 September 2017

1 reference

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Bioinformatics: from genome data to biological knowledge.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Predicting enzyme function from sequence: a systematic appraisal

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

The NAD(P)H-dependent glutamate dehydrogenase activities of Prevotella ruminicola B(1)4 can be attributed to one enzyme (GdhA), and gdhA expression is regulated in response to the nitrogen source available for growth.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Predicting functions from protein sequences--where are the bottlenecks?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Nucleotide sequence of the raw-starch-digesting amylase gene from sp. B1018 and its strong homology to the cyclodextrin glucanotransferase genes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Automated annotation of microbial proteomes in SWISS-PROT.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

A sequence alignment-independent method for protein classification

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Filtering erroneous protein annotation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Statistically rigorous automated protein annotation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Automatic annotation of protein function based on family identification

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Adaptive algorithm of automated annotation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

28 November 2018

1 reference

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Whole-genome sequence annotation: 'Going wrong with confidence'.

28 November 2018

1 reference

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Prediction of enzyme classification from protein sequence without the use of sequence similarity.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1361783

Protein classification based on text document classification techniques

28 November 2018

1 reference

12 December 2020

A discriminative framework for detecting remote protein homologies

1 reference

12 December 2020

Practical limits of function prediction

1 reference

12 December 2020

Modeling the percolation of annotation errors in a database of protein sequences

1 reference

12 December 2020

What we do not know about sequence analysis and sequence databases

1 reference

12 December 2020

Automated genome sequence analysis and annotation

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-6-302

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16354297%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

0 references

journals/bmcbi/LevyOGA05

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16354297%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

16354297

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16354297%20AND%20SRC:MED&resulttype=core&format=json