Differential selection on carotenoid biosynthesis genes as a function of gene position in the metabolic pathway: a study on the carrot and dicots (Q24810365)

From Wikidata

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	Differential selection on carotenoid biosynthesis genes as a function of gene position in the metabolic pathway: a study on the carrot and dicots	scientific article

Statements

scholarly article

0 references

Differential selection on carotenoid biosynthesis genes as a function of gene position in the metabolic pathway: a study on the carrot and dicots (English)

0 references

metabolic pathway

1 reference

based on heuristic

inferred from title

author name string

Jérémy Clotault

1

0 references

Didier Peltier

2

0 references

Vanessa Soufflet-Freslon

3

0 references

Mathilde Briard

4

0 references

Emmanuel Geoffriau

5

0 references

language of work or name

0 references

publication date

2012

0 references

0 references

7

0 references

6

0 references

e38724

0 references

copyright license

Creative Commons Attribution 4.0 International

18 June 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

A chromoplast-specific carotenoid biosynthesis pathway is revealed by cloning of the tomato white-flower locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

A test of neutral molecular evolution based on nucleotide data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

Estimation of levels of gene flow from DNA sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

DnaSP, DNA polymorphism analyses by the coalescent and other methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

Natural selection has driven population differentiation in modern humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

On the number of segregating sites in genetical models without recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

Approximate Bayesian computation in population genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

7 April 2017

Evidence of selection at melanin synthesis pathway loci during silkworm domestication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Influence of mutation rate on estimators of genetic differentiation--lessons from Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

The evolution of control and distribution of adaptive mutations in a metabolic pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Evolutionary rate patterns of the Gibberellin pathway genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Carotenoid crystal formation in Arabidopsis and carrot roots caused by increased phytoene synthase protein levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Carotenoid metabolism: biosynthesis, regulation, and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Carotenoid accumulation and function in seeds and non-green tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Statistical tests for detecting positive selection by utilizing high-frequency variants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Balancing selection and its effects on sequences in nearby genome regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Biogenesis, molecular regulation and function of plant isoprenoids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

The evolution of molecular genetic pathways and networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Effect of misoriented sites on neutrality tests with outgroup.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Evidence for direct carotenoid involvement in the regulation of photosynthetic light harvesting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

The genealogy of sequences containing multiple sites subject to strong selection in a subdivided population.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Genetic diversity and selection in the maize starch pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Methods to detect selection in populations with applications to the human

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

A unified approach to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

Plant carotenoids: pigments for photoprotection, visual attraction, and human health

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 September 2017

The HKA test revisited: a maximum-likelihood-ratio test of the standard neutral model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

30 May 2018

Adaptive evolution of metabolic pathways in Drosophila.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

The correlation of evolutionary rate with pathway position in plant terpenoid biosynthesis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

Evolutionary rate variation in anthocyanin pathway genes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

Patterns of variation in the evolution of carotenoid biosynthetic pathway enzymes of higher plants.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

Carotenoid profiles and consumer sensory evaluation of specialty carrots (Daucus carota, L.) of various colors

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

The effects of artificial selection on the maize genome

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038724

21 January 2018

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377682

28 November 2018

Nucleotide diversity and molecular evolution of the PSY1 gene in Zea mays compared to some other grass species

1 reference

https://pubmed.ncbi.nlm.nih.gov/22737218

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway

1 reference

https://pubmed.ncbi.nlm.nih.gov/22737218

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation in constraint versus positive selection as an explanation for evolutionary rate variation among anthocyanin genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22737218

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Major QTL for carrot color are positionally associated with carotenoid biosynthetic genes and interact epistatically in a domesticated x wild carrot cross

1 reference

https://pubmed.ncbi.nlm.nih.gov/22737218

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Carotenoid biosynthesis genes provide evidence of geographical subdivision and extensive linkage disequilibrium in the carrot

1 reference

https://pubmed.ncbi.nlm.nih.gov/22737218

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0038724

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2012PLoSO...738724C

0 references

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24810365&oldid=2229957424"