The Gypsy Database (GyDB) of mobile genetic elements: release 2.0 (Q24615158)

object named as

Alfonso Munoz-Pomer

0 references

author name string

Carlos Llorens

0 references

Ricardo Futami

0 references

Laura Domínguez-Escribá

0 references

Jose M Viu

0 references

Daniel Tamarit

0 references

Jose Aguilar-Rodríguez

0 references

Miguel Vicente-Ripolles

0 references

Gonzalo Fuster

0 references

Guillermo P Bernet

0 references

Jose M Sempere

0 references

Andres Moya

Creative Commons Attribution-NonCommercial 2.5 Generic

0 references

language of work or name

English

0 references

publication date

January 2011

0 references

published in

Nucleic Acids Research

0 references

volume

0 references

issue

Database issue

0 references

page(s)

D70-4

0 references

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

Genome sequence of the pea aphid Acyrthosiphon pisum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

MEROPS: the peptidase database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

The causes and consequences of HIV evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Profile hidden Markov models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

The chromo superfamily: new members, duplication of the chromo domain and possible role in delivering transcription regulators to chromatin

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Repbase Update, a database of eukaryotic repetitive elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Bioinformatic flowchart and database to investigate the origins and diversity of clan AA peptidases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

PwRn1, a novel Ty3/gypsy-like retrotransposon of Paragonimus westermani: molecular characters and its differentially preserved mobile potential according to host chromosomal polyploidy

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Modern genomes with retro-look: retrotransposed elements, retroposition and the origin of new genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

How Athila retrotransposons survive in the Arabidopsis genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

The Gypsy Database (GyDB) of mobile genetic elements

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

ACLAME: a CLAssification of Mobile genetic Elements

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Evidence for the recent horizontal transfer of long terminal repeat retrotransposon

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Long terminal repeat retrotransposons jump between species

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Diverse Groups of Plant RNA and DNA Viruses Share Related Movement Proteins that may Possess Chaperone-like Activity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Elevated alpha-synuclein mRNA levels in individual UV-laser-microdissected dopaminergic substantia nigra neurons in idiopathic Parkinson's disease

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1061

Novel clades of chromodomain-containing Gypsy LTR retrotransposons from mosses (Bryophyta).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1061

A lineage-specific centromere retrotransposon in Oryza brachyantha

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1061

Genomic screening in dioecious "yerba mate" tree (Ilex paraguariensis A. St. Hill., Aquifoliaceae) through representational difference analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1061

Taxonomy, molecular phylogeny and evolution of plant reverse transcribing viruses (family Caulimoviridae) inferred from full-length genome and reverse transcriptase sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1061

Selfish genetic elements and speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1061

Phylogenetic Analysis of Ribonuclease H Domains Suggests a Late, Chimeric Origin of LTR Retrotransposable Elements and Retroviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1061

The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013669

Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21036865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Is the evolution of transposable elements modular?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21036865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A group of deuterostome Ty3/ gypsy-like retrotransposons with Ty1/ copia-like pol-domain orders

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21036865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1061

1 reference

journals/nar/LlorensFCDVTAVFBMMSLM11

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

21036865

1 reference