Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution (Q24563612)

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English	Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution	scientific article

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scholarly article

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title

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution (English)

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main subject

cell biology

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polyploidy

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based on heuristic

inferred from title

author

Guillaume Blanc

object named as

Guillaume Blanc

series ordinal

1

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Kenneth H. Wolfe

object named as

Kenneth H Wolfe

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2

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language of work or name

English

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publication date

July 2004

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published in

The Plant Cell

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volume

16

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issue

7

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page(s)

1679-91

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cites work

Genomic gene clustering analysis of pathways in eukaryotes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

The hidden duplication past of Arabidopsis thaliana

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Gene order evolution and paleopolyploidy in hemiascomycete yeasts

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Gene ontology: tool for the unification of biology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Preservation of duplicate genes by complementary, degenerative mutations

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

How often do duplicated genes evolve new functions?

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Polyploid Incidence and Evolution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Extensive genomic duplication during early chordate evolution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

The evolutionary fate and consequences of duplicate genes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Genome evolution in polyploids

2 references

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15208398

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

Comparative genome mapping in Brassica

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

24 March 2017

InterProScan--an integration platform for the signature-recognition methods in InterPro

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

7 April 2017

Molecular evidence for an ancient duplication of the entire yeast genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

7 April 2017

Asymmetric sequence divergence of duplicate genes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Dosage sensitivity and the evolution of gene families in yeast

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Divergence in the spatial pattern of gene expression between human duplicate genes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

The evolutionary demography of duplicate genes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Understanding mechanisms of novel gene expression in polyploids

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Rapid divergence in expression between duplicate genes inferred from microarray data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

DNA sequence evidence for the segmental allotetraploid origin of maize

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Comparative genomics of plant chromosomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

The evolution of the MAP kinase pathways: coduplication of interacting proteins leads to new signaling cascades

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Yeast genome evolution in the post-genome era.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Carbon source-dependent phosphorylation of hexokinase PII and its role in the glucose-signaling response in yeast.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Evolution by the birth-and-death process in multigene families of the vertebrate immune system

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

27 September 2017

Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: an interpretation from a dosage balance perspective

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

30 May 2018

Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

30 May 2018

Genome duplication in soybean (Glycine subgenus soja).

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

30 May 2018

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Evidence that rice and other cereals are ancient aneuploids

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Annotation of the Arabidopsis genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

The age of the Arabidopsis thaliana genome duplication

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

A role for nitrilase 3 in the regulation of root morphology in sulphur-starving Arabidopsis thaliana

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Differential selection after duplication in mammalian developmental genes.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

The origins of genomic duplications in Arabidopsis.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Extensive duplication and reshuffling in the Arabidopsis genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=514153

retrieved

28 November 2018

Statistical methods for testing functional divergence after gene duplication

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15208398

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15208398

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutation of the matrix metalloproteinase At2-MMP inhibits growth and causes late flowering and early senescence in Arabidopsis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15208398

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolving protein interaction networks through gene duplication

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15208398

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nonlinear effects in macromolecular assembly and dosage sensitivity

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15208398

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1105/TPC.021410

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

246951

OpenCitations bibliographic resource ID

246951

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

246951

PMC publication ID

514153

0 references

PubMed publication ID

15208398

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

246951

ResearchGate publication ID

8500537

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