The phi29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition (Q24542010)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	The phi29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition	scientific article

Statements

instance of

scholarly article

0 references

title

The phi29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition (English)

0 references

main subject

protein structure

0 references

author

Margarita Salas

series ordinal

7

object named as

Margarita Salas

0 references

author name string

Satwik Kamtekar

series ordinal

1

0 references

Andrea J Berman

series ordinal

2

0 references

Jimin Wang

series ordinal

3

0 references

José M Lázaro

series ordinal

4

0 references

Miguel de Vega

series ordinal

5

0 references

Luis Blanco

series ordinal

6

0 references

Thomas A Steitz

series ordinal

8

0 references

language of work or name

English

0 references

publication date

22 March 2006

0 references

published in

The EMBO Journal

0 references

volume

25

0 references

issue

6

0 references

page(s)

1335-43

0 references

cites work

A specific subdomain in phi29 DNA polymerase confers both processivity and strand-displacement capacity

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structure of the replicating complex of a pol alpha family DNA polymerase

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

A mechanism for initiating RNA-dependent RNA polymerization

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structure of the bacteriophage phi29 DNA packaging motor

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structure of a conserved domain common to the transcription factors TFIIS, elongin A, and CRSP70

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structure of a transcribing T7 RNA polymerase initiation complex

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Structure of the amino-terminal domain of Cbl complexed to its binding site on ZAP-70 kinase

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Likelihood-enhanced fast translation functions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

The CCP4 suite: programs for protein crystallography

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

The PSIPRED protein structure prediction server

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Automated MAD and MIR structure solution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

2 references

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038/SJ.EMBOJ.7601027

retrieved

22 April 2017

Protein structure comparison by alignment of distance matrices

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Improved methods for building protein models in electron density maps and the location of errors in these models

2 references

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038/SJ.EMBOJ.7601027

retrieved

22 April 2017

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Characterization and purification of a phage phi 29-encoded DNA polymerase required for the initiation of replication

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

Identification of a specific telomere terminal transferase activity in Tetrahymena extracts

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

24 March 2017

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038/SJ.EMBOJ.7601027

retrieved

22 April 2017

Bi-cycling the furin pathway: from TGN localization to pathogen activation and embryogenesis

2 references

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601027

retrieved

22 April 2017

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601027

retrieved

21 January 2018

Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

phi29 DNA polymerase-terminal protein interaction. Involvement of residues specifically conserved among protein-primed DNA polymerases

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Beginning to understand the end of the chromosome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

A conserved insertion in protein-primed DNA polymerases is involved in primer terminus stabilisation.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Bacterial RNA polymerases: the wholo story

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Mechanisms of initiation of linear DNA replication in prokaryotes.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Mechanism of DNA replication in eukaryotic cells: cellular host factors stimulating adenovirus DNA replication.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Recombination and recombination-dependent DNA replication in bacteriophage T4.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Dissociation of the Protein Primer and DNA Polymerase after Initiation of Adenovirus DNA Replication

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Protein-primed DNA replication: a transition between two modes of priming by a unique DNA polymerase

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Protein Motifs. 7. The four-helix bundle: what determines a fold?

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Location of the serine residue involved in the linkage between the terminal protein and the DNA of phage phi 29.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Effect of NH4+ ions on phi 29 DNA-protein p3 replication: formation of a complex between the terminal protein and the DNA polymerase

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Structural and functional analysis of temperature-sensitive mutants of the phage phi 29 DNA polymerase

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Protein-priming of DNA replication

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Initiation of phi 29 DNA replication occurs at the second 3' nucleotide of the linear template: a sliding-back mechanism for protein-primed DNA replication.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

27 September 2017

Assembly of a tailed bacterial virus and its genome release studied in three dimensions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

30 May 2018

Effects of internal deletions on the priming activity of the phage phi 29 terminal protein

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1422159

retrieved

30 May 2018

A novel mechanism to ensure terminal initiation by hepatitis C virus NS5B polymerase

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601027

retrieved

21 January 2018

Sequence requirements for protein-primed initiation and elongation of phage O29 DNA replication

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An aspartic acid residue in TPR-1, a specific region of protein-priming DNA polymerases, is required for the functional interaction with primer terminal protein

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Topological and conformational analysis of the initiation and elongation complex of t7 RNA polymerase suggests a new twist

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning and template activity of the origins of replication of phage phi 29 DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A unified polymerase mechanism for nonhomologous DNA and RNA polymerases

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purification of bacteriophage phi 29 DNA polymerase

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16511564

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/SJ.EMBOJ.7601027

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2817773

OpenCitations bibliographic resource ID

2817773

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2817773

PMC publication ID

1422159

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2817773

PubMed publication ID

16511564

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2817773

ResearchGate publication ID

232800393

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24542010&oldid=1947669320"