Pages that link to "Q33740100"
Jump to navigation
Jump to search
The following pages link to Large-scale conformational sampling of proteins using temperature-accelerated molecular dynamics (Q33740100):
Displaying 50 items.
- Extended Phase-Space Methods for Enhanced Sampling in Molecular Simulations: A Review (Q26782827) (← links)
- Dynamics, flexibility and ligand-induced conformational changes in biological macromolecules: a computational approach (Q26851157) (← links)
- Conformational selection in protein binding and function (Q26864698) (← links)
- Thermophilic proteins: insight and perspective from in silico experiments (Q26995534) (← links)
- Computational methods in drug discovery (Q26997089) (← links)
- Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations (Q27333790) (← links)
- Continuum Molecular Simulation of Large Conformational Changes during Ion–Channel Gating (Q27339628) (← links)
- Enhanced, targeted sampling of high-dimensional free-energy landscapes using variationally enhanced sampling, with an application to chignolin (Q28601123) (← links)
- Bhageerath-H: a homology/ab initio hybrid server for predicting tertiary structures of monomeric soluble proteins. (Q30369944) (← links)
- Flexibility and binding affinity in protein-ligand, protein-protein and multi-component protein interactions: limitations of current computational approaches. (Q31033753) (← links)
- Full kinetics of CO entry, internal diffusion, and exit in myoglobin from transition-path theory simulations (Q33901963) (← links)
- Conformational Transition Pathways of Epidermal Growth Factor Receptor Kinase Domain from Multiple Molecular Dynamics Simulations and Bayesian Clustering (Q34045014) (← links)
- A self-learning algorithm for biased molecular dynamics (Q34200169) (← links)
- Conformational dynamics of a regulator of G-protein signaling protein reveals a mechanism of allosteric inhibition by a small molecule. (Q35007870) (← links)
- Enhanced Dynamics of HIV gp120 Glycoprotein by Small Molecule Binding (Q35062926) (← links)
- Conformational changes in acetylcholine binding protein investigated by temperature accelerated molecular dynamics (Q35097431) (← links)
- Allosteric inhibitors have distinct effects, but also common modes of action, in the HCV polymerase (Q35333600) (← links)
- Energy landscape of all-atom protein-protein interactions revealed by multiscale enhanced sampling (Q35361704) (← links)
- Applying efficient implicit nongeometric constraints in alchemical free energy simulations (Q35382222) (← links)
- "DFG-flip" in the insulin receptor kinase is facilitated by a helical intermediate state of the activation loop. (Q35895098) (← links)
- Spontaneous rearrangement of the β20/β21 strands in simulations of unliganded HIV-1 glycoprotein, gp120 (Q36299747) (← links)
- Fluctuation dynamics analysis of gp120 envelope protein reveals a topologically based communication network (Q36386536) (← links)
- On-the-fly free energy parameterization via temperature accelerated molecular dynamics (Q36439710) (← links)
- A geometrical approach to computing free-energy landscapes from short-ranged potentials (Q36512256) (← links)
- A computational study of water and CO migration sites and channels inside myoglobin (Q36682347) (← links)
- Spectral gap optimization of order parameters for sampling complex molecular systems (Q36710407) (← links)
- Unconstrained Enhanced Sampling for Free Energy Calculations of Biomolecules: A Review (Q37114199) (← links)
- Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex (Q37173104) (← links)
- A model of peptide triazole entry inhibitor binding to HIV-1 gp120 and the mechanism of bridging sheet disruption (Q37238636) (← links)
- Collective variable approaches for single molecule flexible fitting and enhanced sampling (Q37697030) (← links)
- Polymorphism at 129 dictates metastable conformations of the human prion protein N-terminal β-sheet. (Q37725033) (← links)
- Biomolecularmodeling and simulation: a field coming of age. (Q37827906) (← links)
- Theoretical and computational studies of peptides and receptors of the insulin family (Q38354696) (← links)
- On the pathways of biologically relevant diatomic gases through proteins. Dioxygen and heme oxygenase from the perspective of molecular dynamics (Q39436699) (← links)
- S4MPLE--Sampler for Multiple Protein-Ligand Entities: Methodology and Rigid-Site Docking Benchmarking (Q40916580) (← links)
- Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d-ALa:d-Lac Ligase VanA. (Q41203690) (← links)
- Enhanced sampling and overfitting analyses in structural refinement of nucleic acids into electron microscopy maps (Q41827669) (← links)
- Following easy slope paths on a free energy landscape: the case study of the Trp-cage folding mechanism (Q42094062) (← links)
- Using enhanced sampling and structural restraints to refine atomic structures into low-resolution electron microscopy maps (Q42233985) (← links)
- Conformational Sampling of Maltose-transporter Components in Cartesian Collective Variables is Governed by the Low-frequency Normal Modes (Q42348373) (← links)
- Mechanism of flexibility control for ATP access of hepatitis C virus NS3 helicase (Q42983047) (← links)
- MuSTAR MD: multi-scale sampling using temperature accelerated and replica exchange molecular dynamics. (Q44321204) (← links)
- Gates and binding pockets for nitric oxide with cytochrome c', according to molecular dynamics (Q44773052) (← links)
- On the pathways for CO egress from carboxy human cytoglobin. A molecular-dynamics investigation (Q45265253) (← links)
- On-the-fly reconstruction of free-energy profiles using logarithmic mean-force dynamics. (Q45307247) (← links)
- Sampling reactive pathways with random walks in chemical space: Applications to molecular dissociation and catalysis (Q46673929) (← links)
- Self-Avoiding Conformational Sampling Based on Histories of Past Conformational Searches. (Q47431459) (← links)
- Multiple Ligand Unbinding Pathways and Ligand-Induced Destabilization Revealed by WExplore (Q47952207) (← links)
- Efficient free energy calculations by combining two complementary tempering sampling methods (Q48010882) (← links)
- Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: A case study of polymer cyclization (Q48150880) (← links)