Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast (Q38346636)

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scientific article published on December 2003

Language	Label	Description	Also known as
English	Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast	scientific article published on December 2003

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

object named as

Shuyun Dong

5

0 references

author name string

Feng He

1

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Xiangrui Li

2

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Phyllis Spatrick

3

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Ryan Casillo

4

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Allan Jacobson

6

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

publication date

1 December 2003

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

1439-1452

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Degradation of mRNA in eukaryotes

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

An essential component of the decapping enzyme required for normal rates of mRNA turnover

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Computational modeling of eukaryotic mRNA turnover

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Computational modeling and experimental analysis of nonsense-mediated decay in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

mRNAs encoding telomerase components and regulators are controlled by UPF genes in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Cluster analysis and display of genome-wide expression patterns

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: frameshifting without tRNA slippage

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

An mRNA surveillance mechanism that eliminates transcripts lacking termination codons

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Nonsense-mediated mRNA decay in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution.

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Upf1p, Nmd2p, and Upf3p regulate the decapping and exonucleolytic degradation of both nonsense-containing mRNAs and wild-type mRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Yeast cells lacking 5'-->3' exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5' cap structure

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Telomere length regulation and telomeric chromatin require the nonsense-mediated mRNA decay pathway

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Interference of nonsense mutations with eukaryotic messenger RNA stability

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Nonsense-containing mRNAs that accumulate in the absence of a functional nonsense-mediated mRNA decay pathway are destabilized rapidly upon its restitution

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Novel Upf2p orthologues suggest a functional link between translation initiation and nonsense surveillance complexes

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradation

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Programmed translational frameshifting in a gene required for yeast telomere replication

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Premature translational termination triggers mRNA decapping

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Turnover mechanisms of the stable yeast PGK1 mRNA

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

The relationship between eukaryotic translation and mRNA stability. A short upstream open reading frame strongly inhibits translational initiation and greatly accelerates mRNA degradation in the yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

mRNA destabilization triggered by premature translational termination depends on at least three cis-acting sequence elements and one trans-acting factor

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

mRNA surveillance by the Caenorhabditis elegans smg genes

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Exosome-mediated recognition and degradation of mRNAs lacking a termination codon

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

The yeast transcription factor genes YAP1 and YAP2 are subject to differential control at the levels of both translation and mRNA stability.

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Precision and functional specificity in mRNA decay

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Genome-wide expression monitoring in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS1097-2765%2803%2900446-5

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1016/S1097-2765(03)00446-5

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

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