Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements (Q36338669)

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Language	Label	Description	Also known as
English	Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

13 August 2017

Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements (English)

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Europe PubMed Central

PMC publication ID

13 August 2017

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CRISPR-Cas method

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based on heuristic

inferred from title

4

object named as

Alexias Safi

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Europe PubMed Central

PMC publication ID

13 August 2017

Gregory E. Crawford

8

object named as

Gregory E Crawford

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PMC publication ID

13 August 2017

3

object named as

Lingyun Song

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Europe PubMed Central

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13 August 2017

author name string

Pratiksha I Thakore

1

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Europe PubMed Central

PMC publication ID

13 August 2017

Anthony M D'Ippolito

2

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Europe PubMed Central

PMC publication ID

13 August 2017

Nishkala K Shivakumar

5

1 reference

Europe PubMed Central

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13 August 2017

Ami M Kabadi

6

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Timothy E Reddy

7

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13 August 2017

Charles A Gersbach

9

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13 August 2017

language of work or name

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publication date

26 October 2015

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Europe PubMed Central

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13 August 2017

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Europe PubMed Central

PMC publication ID

13 August 2017

12

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Europe PubMed Central

PMC publication ID

13 August 2017

12

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

1143-1149

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Functional annotation of native enhancers with a Cas9-histone demethylase fusion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Highly efficient Cas9-mediated transcriptional programming

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture.

1 reference

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30 September 2017

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

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30 September 2017

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

A CRISPR/Cas9-based system for reprogramming cell lineage specification.

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30 September 2017

Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation

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30 September 2017

Comparison of TALE designer transcription factors and the CRISPR/dCas9 in regulation of gene expression by targeting enhancers

1 reference

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30 September 2017

Reactivation of developmentally silenced globin genes by forced chromatin looping.

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30 September 2017

Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins

1 reference

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30 September 2017

Locus-specific editing of histone modifications at endogenous enhancers

1 reference

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30 September 2017

CRISPR RNA-guided activation of endogenous human genes

1 reference

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30 September 2017

RNA-guided gene activation by CRISPR-Cas9-based transcription factors

1 reference

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30 September 2017

Optical control of mammalian endogenous transcription and epigenetic states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

RNA-guided human genome engineering via Cas9

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Multiplex genome engineering using CRISPR/Cas systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

The accessible chromatin landscape of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

An integrated encyclopedia of DNA elements in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains

1 reference

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30 September 2017

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

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30 September 2017

Epigenetic reprogramming of cancer cells via targeted DNA methylation.

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30 September 2017

Fast gapped-read alignment with Bowtie 2

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30 September 2017

NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression

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30 September 2017

Transposase mediated construction of RNA-seq libraries.

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30 September 2017

Differential expression analysis for sequence count data

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666778

30 September 2017

BEDTools: a flexible suite of utilities for comparing genomic features

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30 September 2017

The Sequence Alignment/Map format and SAMtools

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30 September 2017

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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30 September 2017

Model-based analysis of ChIP-Seq (MACS)

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Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

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30 September 2017

The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression

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30 September 2017

Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

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Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation

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SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins

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Structural and functional cross-talk between a distant enhancer and the epsilon-globin gene promoter shows interdependence of the two elements in chromatin

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Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights

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Gene-specific targeting of H3K9 methylation is sufficient for initiating repression in vivo.

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Levels of GATA-1/GATA-2 transcription factors modulate expression of embryonic and fetal hemoglobins

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Production and titration of lentiviral vectors.

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3630

7 January 2021

based on heuristic

inferred from DOI database lookup

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10.1038/NMETH.3630

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Europe PubMed Central

PMC publication ID

13 August 2017

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0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

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