micropan: an R-package for microbial pan-genomics. (Q35608104)

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scientific article published on 12 March 2015

Language	Label	Description	Also known as
English	micropan: an R-package for microbial pan-genomics.	scientific article published on 12 March 2015

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

micropan: an R-package for microbial pan-genomics (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

based on heuristic

inferred from name or label

7 September 2021

Kristian Hovde Liland

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

author name string

Lars Snipen

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

publication date

12 March 2015

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

BMC Bioinformatics

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

16

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

79

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

copyright license

Creative Commons Attribution 2.0 Generic

12 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

1 reference

based on heuristic

inferred from title

Estimation of prokaryotic supergenome size and composition from gene frequency distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

A domain sequence approach to pangenomics: applications to Escherichia coli

1 reference

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27 July 2018

ITEP: an integrated toolkit for exploration of microbial pan-genomes

1 reference

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27 July 2018

The infinitely many genes model for the distributed genome of bacteria.

1 reference

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27 July 2018

Toward community standards in the quest for orthologs

1 reference

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27 July 2018

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti

1 reference

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27 July 2018

Standard operating procedure for computing pangenome trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Complete sequencing and pan-genomic analysis of Lactobacillus delbrueckii subsp. bulgaricus reveal its genetic basis for industrial yogurt production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Genomic fluidity: an integrative view of gene diversity within microbial populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Comparison of 61 sequenced Escherichia coli genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

A new generation of homology search tools based on probabilistic inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Microbial comparative pan-genomics using binomial mixture models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Estimating the size of the bacterial pan-genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Comparative genomics: the bacterial pan-genome

1 reference

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27 July 2018

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

A probabilistic model of local sequence alignment that simplifies statistical significance estimation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Enterococcus faecalis from newborn babies regulate endogenous PPARgamma activity and IL-10 levels in colonic epithelial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Estimating the population size for capture-recapture data with unequal catchability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

Carriage of group D streptococci in the human bowel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

27 July 2018

The discrete Laplace exponential family and estimation of Y-STR haplotype frequencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

25 September 2018

eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

25 September 2018

Microbiology. The thin line between gut commensal and pathogen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4375852

25 September 2018

Estimating the Dimension of a Model

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0517-0

21 January 2018

The Relation Between the Number of Species and the Number of Individuals in a Random Sample of an Animal Population

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0517-0

21 January 2018

Nosocomial infections in combined medical-surgical intensive care units in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/25888166

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative genomic analysis for the presence of potential enterococcal virulence factors in the probiotic Enterococcus faecalis strain Symbioflor 1

1 reference

https://pubmed.ncbi.nlm.nih.gov/25888166

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12859-015-0517-0

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

DBLP publication ID

journals/bmcbi/SnipenL15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25888166%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

ResearchGate publication ID

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