Structure-templated predictions of novel protein interactions from sequence information (Q28469306)

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Language	Label	Description	Also known as
English	Structure-templated predictions of novel protein interactions from sequence information	scientific article

Statements

scholarly article

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Structure-templated predictions of novel protein interactions from sequence information (English)

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protein structure

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protein structure prediction

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3

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1

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author name string

Kevin E Breitkreuz

2

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Danielle Dewar-Darch

4

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Mike Tyers

5

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Christopher W V Hogue

6

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language of work or name

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publication date

September 2007

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PLOS Computational Biology

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3

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9

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1783-9

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copyright license

Creative Commons Attribution 4.0 International

21 September 2007

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April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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7 April 2017

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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10.1371/JOURNAL.PCBI.0030182

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journals/ploscb/BetelBIDTH07

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DBLP Dataset 2021-01-02

28 January 2021

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