Automatic extraction of protein-protein interactions using grammatical relationship graph (Q90681860)

From Wikidata

Jump to navigation Jump to search

The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.

scientific article published on 23 July 2018

Language	Label	Description	Also known as
English	Automatic extraction of protein-protein interactions using grammatical relationship graph	scientific article published on 23 July 2018

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Automatic extraction of protein-protein interactions using grammatical relationship graph (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

protein-protein interaction

1 reference

based on heuristic

inferred from title

author name string

Kaixian Yu

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Pei-Yau Lung

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Tingting Zhao

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Peixiang Zhao

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Yan-Yuan Tseng

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Jinfeng Zhang

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

publication date

23 July 2018

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

BMC Medical Informatics and Decision Making

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

18

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Suppl 2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

42

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

copyright license

Creative Commons Attribution 4.0 International

1 July 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Automatic extraction of biological information from scientific text: protein-protein interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic extraction of protein interactions from scientific abstracts

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated extraction of information on protein-protein interactions from the biological literature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Event extraction from biomedical papers using a full parser.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PIES, a protein interaction extraction system.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A literature network of human genes for high-throughput analysis of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Filling preposition-based templates to capture information from medical abstracts.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Robust relational parsing over biomedical literature: extracting inhibit relations

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Learning anchor verbs for biological interaction patterns from published text articles.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TRANSFAC: transcriptional regulation, from patterns to profiles

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extraction of protein interaction information from unstructured text using a context-free grammar

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Database of Interacting Proteins: 2004 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HPID: the Human Protein Interaction Database

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Discovering patterns to extract protein-protein interactions from full texts

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic extraction of gene/protein biological functions from biomedical text

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PDZBase: a protein-protein interaction database for PDZ-domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The MIPS mammalian protein-protein interaction database

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Biomolecular Interaction Network Database and related tools 2005 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic association of genes to phenotypes by genome and literature mining

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Beyond the clause: extraction of phosphorylation information from medline abstracts

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extraction of regulatory gene/protein networks from Medline

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extraction of biological interaction networks from scientific literature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Argonaute--a database for gene regulation by mammalian microRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human protein reference database--2006 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BioGRID: a general repository for interaction datasets

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DBTGR: a database of tunicate promoters and their regulatory elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Literature mining for the biologist: from information retrieval to biological discovery

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Combination of text-mining algorithms increases the performance

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MINT: the Molecular INTeraction database

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An evaluation of human protein-protein interaction data in the public domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Data mining and predictive modeling of biomolecular network from biomedical literature databases

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein interactions and disease: computational approaches to uncover the etiology of diseases.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mining gene-disease relationships from biomedical literature: weighting protein-protein interactions and connectivity measures.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kernel approaches for genic interaction extraction

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ORegAnno: an open-access community-driven resource for regulatory annotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

STITCH: interaction networks of chemicals and proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linking entries in protein interaction database to structured text: the FEBS Letters experiment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative analysis of five protein-protein interaction corpora

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping proteins to disease terminologies: from UniProt to MeSH

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PIE: an online prediction system for protein-protein interactions from text

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Seeking a new biology through text mining

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large-scale directional relationship extraction and resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mining physical protein-protein interactions from the literature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Overview of the protein-protein interaction annotation extraction task of BioCreative II

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The GOA database in 2009--an integrated Gene Ontology Annotation resource

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human Protein Reference Database--2009 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluating contributions of natural language parsers to protein-protein interaction extraction

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bayesian inference of protein-protein interactions from biological literature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein-protein interaction extraction by leveraging multiple kernels and parsers.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The IntAct molecular interaction database in 2010

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Looking at cerebellar malformations through text-mined interactomes of mice and humans

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MINT, the molecular interaction database: 2009 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extracting causal relations on HIV drug resistance from literature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A hybrid approach to extract protein–protein interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The BioGRID Interaction Database: 2011 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrated Bio-Entity Network: A System for Biological Knowledge Discovery

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The BioGRID interaction database: 2013 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PPInterFinder--a mining tool for extracting causal relations on human proteins from literature

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the efficacy of per-relation basis performance evaluation for PPI extraction and a high-precision rule-based approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PIPE: a protein-protein interaction passage extraction module for BioCreative challenge

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-based prediction of protein protein interaction using a deep-learning algorithm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distributed smoothed tree kernel for protein-protein interaction extraction from the biomedical literature.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30066644

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12911-018-0628-4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

DBLP publication ID

journals/midm/YuLZZTZ18

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30066644%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q90681860&oldid=1893482598"