Benchmarking graph neural networks

VP Dwivedi, CK Joshi, AT Luu, T Laurent… - Journal of Machine …, 2023 - jmlr.org
… -source benchmarking framework for Graph Neural Networks that … The benchmark led us
to propose graph PE that has … the first release of our benchmark. We also perform additional …

Benchmarking graph neural networks for materials chemistry

V Fung, J Zhang, E Juarez, BG Sumpter - npj Computational Materials, 2021 - nature.com
… A general graph neural network architecture is constructed, taking in graphs containing
nodes, edges, node attributes, and edge attributes, inputted into an embedding layer, GC blocks, …

Are we really making much progress? revisiting, benchmarking and refining heterogeneous graph neural networks

Q Lv, M Ding, Q Liu, Y Chen, W Feng, S He… - Proceedings of the 27th …, 2021 - dl.acm.org
… information, connecting the novel and effective graph-learning algorithms to the noisy and
… Heterogeneous Graph Benchmark (HGB). HGB currently contains 11 heterogeneous graph

Braingb: a benchmark for brain network analysis with graph neural networks

H Cui, W Dai, Y Zhu, X Kan, AAC Gu… - IEEE transactions on …, 2022 - ieeexplore.ieee.org
… In this work, we propose Brain Graph Neural Network Benchmark (BrainGB)—a novel
attempt to benchmark brain network analysis with GNNs to the best of our knowledge. The …

A comprehensive survey on graph neural networks

Z Wu, S Pan, F Chen, G Long, C Zhang… - … on neural networks …, 2020 - ieeexplore.ieee.org
… In this section, we summarize the benchmark graph data sets, evaluation methods, and
opensource implementation, respectively. We detail practical applications of GNNs in various …

Evaluating explainability for graph neural networks

C Agarwal, O Queen, H Lakkaraju, M Zitnik - Scientific Data, 2023 - nature.com
… show how GraphXAI enables systematic benchmarking of eight state-of-the-… graph datasets.
We explore the utility of the ShapeGGen generator to benchmark GNN explainers on graphs

Fedgraphnn: A federated learning system and benchmark for graph neural networks

C He, K Balasubramanian, E Ceyani, C Yang… - arXiv preprint arXiv …, 2021 - arxiv.org
graph models. In this work, we focus on graph neural networks (GNNs) as the graph
models and extend the emerging studies on federated learning (FL) over neural network

Wiki-cs: A wikipedia-based benchmark for graph neural networks

P Mernyei, C Cangea - arXiv preprint arXiv:2007.02901, 2020 - arxiv.org
… from Wikipedia for benchmarking Graph Neural Networks. The … benchmarks. The dataset
is publicly available, along with the implementation of the data pipeline and the benchmark

Evaluating graph neural networks for link prediction: Current pitfalls and new benchmarking

J Li, H Shomer, H Mao, S Zeng, Y Ma… - … in Neural …, 2024 - proceedings.neurips.cc
… on only a portion of edges of a graph. A flurry of methods have been introduced in recent
years that attempt to make use of graph neural networks (GNNs) for this task. Furthermore, new …

The emerging graph neural networks for intelligent fault diagnostics and prognostics: A guideline and a benchmark study

T Li, Z Zhou, S Li, C Sun, R Yan, X Chen - Mechanical Systems and Signal …, 2022 - Elsevier
… A practical guideline on leveraging graph neural networks (GNNs) for realizing … Benchmark
study. We evaluate the aforementioned GNNs on eight datasets and provide the benchmark