| A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1218 | 2013 |
| Applications of genome‐scale metabolic reconstructions MA Oberhardt, BØ Palsson, JA Papin Molecular systems biology 5 (1), 320, 2009 | 996 | 2009 |
| Reconstruction of cellular signalling networks and analysis of their properties JA Papin, T Hunter, BO Palsson, S Subramaniam Nature reviews Molecular cell biology 6 (2), 99-111, 2005 | 703 | 2005 |
| Genome-scale microbial in silico models: the constraints-based approach ND Price, JA Papin, CH Schilling, BO Palsson Trends in biotechnology 21 (4), 162-169, 2003 | 536 | 2003 |
| Comparison of network-based pathway analysis methods JA Papin, J Stelling, ND Price, S Klamt, S Schuster, BO Palsson Trends in biotechnology 22 (8), 400-405, 2004 | 501 | 2004 |
| Metabolic pathways in the post-genome era JA Papin, ND Price, SJ Wiback, DA Fell, BO Palsson Trends in biochemical sciences 28 (5), 250-258, 2003 | 457 | 2003 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 456* | 2020 |
| Metabolic network reconstruction of Chlamydomonas offers insight into light‐driven algal metabolism RL Chang, L Ghamsari, A Manichaikul, EFY Hom, S Balaji, W Fu, Y Shen, ... Molecular systems biology 7 (1), 518, 2011 | 380 | 2011 |
| Flux balance analysis in the era of metabolomics JM Lee, EP Gianchandani, JA Papin Briefings in bioinformatics 7 (2), 140-150, 2006 | 374 | 2006 |
| Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1 MA Oberhardt, J Puchałka, KE Fryer, VAP Martins dos Santos, JA Papin Journal of bacteriology 190 (8), 2790-2803, 2008 | 322 | 2008 |
| Integration of expression data in genome-scale metabolic network reconstructions AS Blazier, JA Papin Frontiers in physiology 3, 299, 2012 | 312 | 2012 |
| Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology J Puchałka, MA Oberhardt, M Godinho, A Bielecka, D Regenhardt, ... PLoS computational biology 4 (10), e1000210, 2008 | 308 | 2008 |
| Dynamic analysis of integrated signaling, metabolic, and regulatory networks J Min Lee, EP Gianchandani, JA Eddy, JA Papin PLoS computational biology 4 (5), e1000086, 2008 | 307 | 2008 |
| Functional integration of a metabolic network model and expression data without arbitrary thresholding PA Jensen, JA Papin Bioinformatics 27 (4), 541-547, 2011 | 290 | 2011 |
| Multiscale computational models of complex biological systems J Walpole, JA Papin, SM Peirce Annual review of biomedical engineering 15 (1), 137-154, 2013 | 270 | 2013 |
| Hierarchical thinking in network biology: the unbiased modularization of biochemical networks JA Papin, JL Reed, BO Palsson Trends in biochemical sciences 29 (12), 641-647, 2004 | 257 | 2004 |
| Extreme pathway lengths and reaction participation in genome-scale metabolic networks JA Papin, ND Price, BØ Palsson Genome research 12 (12), 1889-1900, 2002 | 200 | 2002 |
| The application of flux balance analysis in systems biology EP Gianchandani, AK Chavali, JA Papin Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (3), 372-382, 2010 | 196 | 2010 |
| Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major AK Chavali, JD Whittemore, JA Eddy, KT Williams, JA Papin Molecular systems biology 4 (1), 177, 2008 | 196 | 2008 |
| Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions EM Blais, KD Rawls, BV Dougherty, ZI Li, GL Kolling, P Ye, A Wallqvist, ... Nature communications 8 (1), 14250, 2017 | 179 | 2017 |
Bernhard PalssonBioengineering and Pediatrics, UC-San DiegoAdresse e-mail validée de ucsd.edu
