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VSEARCH: a versatile open source tool for metagenomics
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
retrieved
10 September 2017
title
VSEARCH: a versatile open source tool for metagenomics
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
retrieved
10 September 2017
main subject
open-source software
0 references
metagenomics
1 reference
based on heuristic
inferred from title
author
Torbjørn Rognes
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
Christopher Quince
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
Frédéric Mahé
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
Ben Nichols
series ordinal
3
object named as
Ben Nichols
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
author name string
Tomáš Flouri
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
publication date
18 October 2016
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
retrieved
10 September 2017
published in
PeerJ
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
volume
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
page(s)
e2584
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
copyright license
Creative Commons Attribution 4.0 International
start time
18 October 2016
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
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PubMed Central
reference URL
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10 September 2017
Planetary boundaries: Guiding human development on a changing planet
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10 September 2017
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10 September 2017
The Earth Microbiome project: successes and aspirations
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10 September 2017
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10 September 2017
PEAR: a fast and accurate Illumina Paired-End reAd mergeR.
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10 September 2017
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
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10 September 2017
UPARSE: highly accurate OTU sequences from microbial amplicon reads
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10 September 2017
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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10 September 2017
Rfam 11.0: 10 years of RNA families
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
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10 September 2017
PANDAseq: paired-end assembler for illumina sequences
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UCHIME improves sensitivity and speed of chimera detection
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10 September 2017
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
Search and clustering orders of magnitude faster than BLAST
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
QIIME allows analysis of high-throughput community sequencing data
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
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10 September 2017
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
A safe operating space for humanity
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
retrieved
10 September 2017
Fast and accurate short read alignment with Burrows-Wheeler transform
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
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10 September 2017
Efficient methods for multiple sequence alignment with guaranteed error bounds
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
retrieved
10 September 2017
A general method applicable to the search for similarities in the amino acid sequence of two proteins
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
retrieved
10 September 2017
Optimal alignments in linear space
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
retrieved
10 September 2017
Error filtering, pair assembly and error correction for next-generation sequencing reads
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
retrieved
25 September 2017
Swarm: robust and fast clustering method for amplicon-based studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
retrieved
15 June 2018
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5075697
retrieved
21 August 2018
Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/27781170
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.7717/PEERJ.2584
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
PMC publication ID
5075697
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
PubMed publication ID
27781170
1 reference
stated in
Europe PubMed Central
PMC publication ID
5075697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27781170%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 June 2020
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