(Q37749492)

22 August 2017

1 reference

title

Decoding signalling networks by mass spectrometry-based proteomics (English)

1 reference

22 August 2017

0 references

Chunaram Choudhary

1 reference

22 August 2017

Matthias Mann

series ordinal

1 reference

22 August 2017

publication date

12 May 2010

1 reference

Nature Reviews Molecular Cell Biology

22 August 2017

published in

1 reference

22 August 2017

1 reference

22 August 2017

1 reference

22 August 2017

page(s)

427-439

1 reference

describes a project that uses

22 August 2017

1 reference

Reading protein modifications with interaction domains

1 reference

The age of crosstalk: phosphorylation, ubiquitination, and beyond

31 March 2020

1 reference

In-gel digestion for mass spectrometric characterization of proteins and proteomes

31 March 2020

1 reference

Direct analysis of protein complexes using mass spectrometry

31 March 2020

1 reference

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

31 March 2020

1 reference

Mass spectrometry and protein analysis

31 March 2020

1 reference

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

31 March 2020

1 reference

The ABC's (and XYZ's) of peptide sequencing

31 March 2020

1 reference

A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry

31 March 2020

1 reference

Higher-energy C-trap dissociation for peptide modification analysis.

31 March 2020

1 reference

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

31 March 2020

1 reference

Electron capture dissociation for structural characterization of multiply charged protein cations

31 March 2020

1 reference

Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications

31 March 2020

1 reference

Mass spectrometry-based proteomics turns quantitative

31 March 2020

1 reference

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

31 March 2020

1 reference

Functional and quantitative proteomics using SILAC

31 March 2020

1 reference

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

31 March 2020

1 reference

Super-SILAC mix for quantitative proteomics of human tumor tissue

31 March 2020

1 reference

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

31 March 2020

1 reference

iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly".

31 March 2020

1 reference

Stable-isotope dimethyl labeling for quantitative proteomics

31 March 2020

1 reference

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

31 March 2020

1 reference

Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry

31 March 2020

1 reference

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

31 March 2020

1 reference

The phagosomal proteome in interferon-gamma-activated macrophages

31 March 2020

1 reference

An Overview of Label-Free Quantitation Methods in Proteomics by Mass Spectrometry

31 March 2020

1 reference

Quantitative proteomics reveals subset-specific viral recognition in dendritic cells.

31 March 2020

1 reference

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

31 March 2020

1 reference

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

31 March 2020

1 reference

Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT.

31 March 2020

1 reference

A high-quality catalog of the Drosophila melanogaster proteome

31 March 2020

1 reference

Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level.

31 March 2020

1 reference

Global analysis of protein expression in yeast

31 March 2020

1 reference

Global analysis of protein localization in budding yeast

31 March 2020

1 reference

Universal sample preparation method for proteome analysis

31 March 2020

1 reference

Directed mass spectrometry: towards hypothesis-driven proteomics

31 March 2020

1 reference

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

31 March 2020

1 reference

Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics.

31 March 2020

1 reference

A sensitive mass spectrometric method for hypothesis-driven detection of peptide post-translational modifications: multiple reaction monitoring-initiated detection and sequencing (MIDAS).

31 March 2020

1 reference

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

31 March 2020

1 reference

Bioinformatics analysis of mass spectrometry-based proteomics data sets

31 March 2020

1 reference

Target-decoy search strategy for mass spectrometry-based proteomics

31 March 2020

1 reference

Gene ontology: tool for the unification of biology

31 March 2020

1 reference

The KEGG resource for deciphering the genome

31 March 2020

1 reference

Interpreting the protein language using proteomics.

31 March 2020

1 reference

Mapping protein post-translational modifications with mass spectrometry

31 March 2020

1 reference

Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques

31 March 2020

1 reference

Global and site-specific quantitative phosphoproteomics: principles and applications

31 March 2020

1 reference

Lysine acetylation targets protein complexes and co-regulates major cellular functions

31 March 2020

1 reference

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

31 March 2020

1 reference

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

31 March 2020

1 reference

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

31 March 2020

1 reference

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

31 March 2020

1 reference

Identifying and quantifying in vivo methylation sites by heavy methyl SILAC

31 March 2020

1 reference

Substrate and functional diversity of lysine acetylation revealed by a proteomics survey

31 March 2020

1 reference

Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux

31 March 2020

1 reference

A proteomics approach to understanding protein ubiquitination

31 March 2020

1 reference

System-wide changes to SUMO modifications in response to heat shock

31 March 2020

1 reference

Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software.

31 March 2020

1 reference

In vivo identification of human small ubiquitin-like modifier polymerization sites by high accuracy mass spectrometry and an in vitro to in vivo strategy

31 March 2020

1 reference

31 March 2020

1 reference

FLICE, a novel FADD-homologous ICE/CED-3-like protease, is recruited to the CD95 (Fas/APO-1) death--inducing signaling complex

31 March 2020

1 reference

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

31 March 2020

1 reference

Quantitative phosphoproteomics by mass spectrometry: past, present, and future

31 March 2020

1 reference

Receptor tyrosine kinase signaling: a view from quantitative proteomics

31 March 2020

1 reference

Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics

31 March 2020

1 reference

Temporal dynamics of tyrosine phosphorylation in insulin signaling.

31 March 2020

1 reference

Dissection of the insulin signaling pathway via quantitative phosphoproteomics

31 March 2020

1 reference

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

31 March 2020

1 reference

Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions

31 March 2020

1 reference

Cell-specific information processing in segregating populations of Eph receptor ephrin-expressing cells

31 March 2020

1 reference

Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation

31 March 2020

1 reference

Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins

31 March 2020

1 reference

Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells

31 March 2020

1 reference

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

31 March 2020

1 reference

Phosphoproteomic analysis of human embryonic stem cells

31 March 2020

1 reference

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

31 March 2020

1 reference

A quantitative atlas of mitotic phosphorylation

31 March 2020

1 reference

Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: a quantitative proteomic analysis.

31 March 2020

1 reference

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage

31 March 2020

1 reference

Profiling of UV-induced ATM/ATR signaling pathways.

31 March 2020

1 reference

Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle

31 March 2020

1 reference

Quantitative analysis of the human spindle phosphoproteome at distinct mitotic stages

31 March 2020

1 reference

Oncogenic kinase signalling

31 March 2020

1 reference

Chemical rescue of a mutant enzyme in living cells

31 March 2020

1 reference

Signaling networks assembled by oncogenic EGFR and c-Met

31 March 2020

1 reference

Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays.

31 March 2020

1 reference

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

31 March 2020

1 reference

Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry

31 March 2020

1 reference

Functional proteomics identifies targets of phosphorylation by B-Raf signaling in melanoma

31 March 2020

1 reference

Endocytosis and signalling: intertwining molecular networks

31 March 2020

1 reference

Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes

31 March 2020

1 reference

Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors

31 March 2020

1 reference

A quantitative analysis of kinase inhibitor selectivity

31 March 2020

1 reference

Proteomics strategy for quantitative protein interaction profiling in cell extracts.

31 March 2020

1 reference

Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics

31 March 2020

1 reference

Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis

31 March 2020

1 reference

Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics

31 March 2020

1 reference

Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics

31 March 2020

1 reference

Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases

31 March 2020

1 reference

Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution

31 March 2020

1 reference

Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data

31 March 2020

1 reference

Systematic Discovery of In Vivo Phosphorylation Networks

31 March 2020

1 reference

Linear Motif Atlas for Phosphorylation-Dependent Signaling

31 March 2020

1 reference

Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases

31 March 2020

1 reference

Analysis of protein complexes using mass spectrometry

31 March 2020

1 reference

High confidence determination of specific protein-protein interactions using quantitative mass spectrometry

31 March 2020

1 reference

An integrated workflow for charting the human interaction proteome: insights into the PP2A system

31 March 2020

1 reference

A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein

31 March 2020

1 reference

Cell fate decisions are specified by the dynamic ERK interactome

31 March 2020

1 reference

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

31 March 2020

1 reference

Phosphotyrosine interactome of the ErbB-receptor kinase family

31 March 2020

1 reference

The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2.

31 March 2020

1 reference

Host cell interactome of tyrosine-phosphorylated bacterial proteins

31 March 2020

1 reference

Toward a high-resolution view of nuclear dynamics

31 March 2020

1 reference

Quantitative proteomic analysis of single pancreatic islets

31 March 2020

1 reference

Computational prediction of proteotypic peptides for quantitative proteomics

31 March 2020

1 reference

Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer

31 March 2020

1 reference

Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

31 March 2020

1 reference

On the proper use of mass accuracy in proteomics.

31 March 2020

1 reference

Precision proteomics: the case for high resolution and high mass accuracy

31 March 2020

1 reference

Global analysis of the yeast osmotic stress response by quantitative proteomics

31 March 2020

1 reference

Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors

31 March 2020

1 reference

A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20461098

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Extensive crosstalk between O-GlcNAcylation and phosphorylation regulates cytokinesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20461098

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRM2900

1 reference

Dimensions Publication ID

22 August 2017

1046188837

0 references

1 reference