(Q37509331)

English

Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions

scientific article published on 19 August 2004

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions (English)

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

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author name string

Keiji Takamoto

1

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Mark R Chance

2

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Europe PubMed Central

PMC publication ID

20 August 2017

Michael Brenowitz

3

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Europe PubMed Central

PMC publication ID

20 August 2017

language of work or name

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publication date

19 August 2004

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Europe PubMed Central

PMC publication ID

20 August 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

20 August 2017

32

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Europe PubMed Central

PMC publication ID

20 August 2017

15

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

E119

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC516076/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Site-specific OH attack to the sugar moiety of DNA: a comparison of experimental data and computational simulation

1 reference

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23 August 2017

Mathematical functions for the representation of chromatographic peaks

1 reference

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23 August 2017

DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

1 reference

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23 August 2017

Quantitative analysis of electrophoresis data: novel curve fitting methodology and its application to the determination of a protein-DNA binding constant

1 reference

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Quantitative DNase footprint titration: a method for studying protein-DNA interactions

1 reference

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23 August 2017

"Footprint" titrations yield valid thermodynamic isotherms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516076

23 August 2017

Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein

1 reference

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Defining the inside and outside of a catalytic RNA molecule

1 reference

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Iron(II)-ethylenediaminetetraacetic acid catalyzed cleavage of RNA and DNA oligonucleotides: similar reactivity toward single- and double-stranded forms

1 reference

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Visualizing the higher order folding of a catalytic RNA molecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516076

23 August 2017

'Footprinting' proteins on DNA with peroxonitrous acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516076

14 September 2017

Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516076

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Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme.

1 reference

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Center for Synchrotron Biosciences' U2B beamline: an international resource for biological infrared spectroscopy

1 reference

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2 September 2018

Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme

1 reference

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Concerted binding and bending of DNA by Escherichia coli integration host factor.

1 reference

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Productive folding to the native state by a group II intron ribozyme

1 reference

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2 September 2018

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

1 reference

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2 September 2018

System for accurate one-dimensional gel analysis including high-resolution quantitative footprinting.

1 reference

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DNA conformational changes associated with the cooperative binding of cI-repressor of bacteriophage lambda to OR.

1 reference

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2 September 2018

Iron(II) EDTA used to measure the helical twist along any DNA molecule

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA footprinting with hydroxyl radical

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydroxyl radical footprinting

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[19] Following the folding of RNA with time-resolved synchrotron X-ray footprinting

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[22] Time-resolved synchrotron X-ray footprinting and its application to RNA folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the Tetrahymena ribozyme folding pathway using the kinetic footprinting reagent peroxynitrous acid

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobility, diffusion and dispersion of single-stranded DNA in sequencing gels

1 reference

https://pubmed.ncbi.nlm.nih.gov/15319447

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GNH117

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

ResearchGate publication ID

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