(Q37392514)

20 August 2017

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title

RNA degradation in Archaea and Gram-negative bacteria different from Escherichia coli (English)

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Elena Evguenieva-Hackenberg

20 August 2017

main subject

gram-negative bacteria

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Escherichia coli

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Archaea

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author

series ordinal

object named as

Elena Evguenieva-Hackenberg

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Gabriele Klug

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Elena Evguenieva-Hackenberg

series ordinal

1 reference

20 August 2017

language of work or name

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1 January 2009

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Progress in Molecular Biology and Translational Science

20 August 2017

published in

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20 August 2017

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20 August 2017

page(s)

275-317

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Phylogenetic structure of the prokaryotic domain: The primary kingdoms

20 August 2017

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7 January 2021

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7 January 2021

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7 January 2021

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Characterization of the role of ribonucleases in Salmonella small RNA decay

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7 January 2021

Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli

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7 January 2021

Polyadenylylation helps regulate mRNA decay in Escherichia coli.

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7 January 2021

The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.

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7 January 2021

Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal

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7 January 2021

Ribonuclease E is a 5'-end-dependent endonuclease

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7 January 2021

The catalytic domain of RNase E shows inherent 3' to 5' directionality in cleavage site selection

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7 January 2021

Ectopic RNase E sites promote bypass of 5'-end-dependent mRNA decay in Escherichia coli.

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7 January 2021

Roles of polyadenylation and nucleolytic cleavage in the filamentous phage mRNA processing and decay pathways in Escherichia coli

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7 January 2021

Degradation of RNA in bacteria: comparison of mRNA and stable RNA

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7 January 2021

Running rings around RNA: a superfamily of phosphate-dependent RNases.

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7 January 2021

Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex.

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7 January 2021

Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family

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7 January 2021

Oligoribonuclease is an essential component of the mRNA decay pathway

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7 January 2021

The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells

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7 January 2021

The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.

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7 January 2021

Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II.

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7 January 2021

RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli

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7 January 2021

DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double-stranded RNA independent of the degradosome-assembling region of RNase E.

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7 January 2021

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

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7 January 2021

The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.

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7 January 2021

Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E.

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7 January 2021

5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA

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7 January 2021

Processing endoribonucleases and mRNA degradation in bacteria

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7 January 2021

Shutdown decay of mRNA.

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7 January 2021

tmRNA determinants required for facilitating nonstop mRNA decay

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7 January 2021

RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner.

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7 January 2021

Interference of mRNA function by sequence-specific endoribonuclease PemK.

1 reference

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7 January 2021

Identification of an mRNA element promoting rate-limiting cleavage of the polycistronic puf mRNA in Rhodobacter capsulatus by an enzyme similar to RNase E.

1 reference

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7 January 2021

Effect of the pufQ-pufB intercistronic region on puf mRNA stability in Rhodobacter capsulatus.

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7 January 2021

Endonucleolytic degradation of puf mRNA in Rhodobacter capsulatus is influenced by oxygen

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

An mRNA degrading complex in Rhodobacter capsulatus.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Composition and activity of the Rhodobacter capsulatus degradosome vary under different oxygen concentrations

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Temperature-dependent processing of the cspA mRNA in Rhodobacter capsulatus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

CIRCE is not involved in heat-dependent transcription of groESL but in stabilization of the mRNA 5'-end in Rhodobacter capsulatus.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Post-transcriptional regulation of the Bacillus subtilis dnaK operon

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Evidence in vivo that the DEAD-box RNA helicase RhlB facilitates the degradation of ribosome-free mRNA by RNase E

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Exoribonuclease R in Pseudomonas syringae is essential for growth at low temperature and plays a novel role in the 3' end processing of 16 and 5 S ribosomal RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

AU binding proteins recruit the exosome to degrade ARE-containing mRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

ARE-mRNA degradation requires the 5'-3' decay pathway.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Localization of AU-rich element-containing mRNA in cytoplasmic granules containing exosome subunits

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Mechanisms of gene silencing by double-stranded RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

The nonsense-mediated decay RNA surveillance pathway

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradation

1 reference

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7 January 2021

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Reconstitution, activities, and structure of the eukaryotic RNA exosome

1 reference

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7 January 2021

A single subunit, Dis3, is essentially responsible for yeast exosome core activity

1 reference

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7 January 2021

Architecture of the yeast Rrp44 exosome complex suggests routes of RNA recruitment for 3' end processing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Polyadenylated RNA isolated from the archaebacterium Halobacterium halobium

1 reference

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7 January 2021

Translation initiation factor a/eIF2(-gamma) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNA polyadenylation in Archaea: not observed in Haloferax while the exosome polynucleotidylates RNA in Sulfolobus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Microarray-based analyses of mRNA decay in the regulation of mammalian gene expression

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Precision and functional specificity in mRNA decay

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Transcription in archaea: similarity to that in eucarya

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https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

mRNAs in the methanogenic archaeon Methanococcus vannielii: numbers, half-lives and processing.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Effect of actinomycin D on cellular nucleic acid synthesis and virus production

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Stability of mRNA in the hyperthermophilic archaeon Sulfolobus solfataricus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Individual gvp transcript segments in Haloferax mediterranei exhibit varying half-lives, which are differentially affected by salt concentration and growth phase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Global analysis of mRNA stability in the archaeon Sulfolobus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Expression of the major gas vesicle protein gene in the halophilic archaebacteriumHaloferax mediterranei is modulated by salt

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Three different but related gene clusters encoding gas vesicles in halophilic archaea

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Influence of salt on the transcription of the gas-vesicle genes of Haloferax mediterranei and identification of the endogenous transcriptional activator gene

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

GvpE- and GvpD-mediated transcription regulation of the p-gvp genes encoding gas vesicles in Halobacterium salinarum

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Two different mechanisms for ribosome/mRNA interaction in archaeal translation initiation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Mechanism of RNA silencing by Hfq-binding small RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

tRNA 3' end maturation in archaea has eukaryotic features: the RNase Z from Haloferax volcanii

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Properties of H. volcanii tRNA intron endonuclease reveal a relationship between the archaeal and eucaryal tRNA intron processing systems

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Ribonucleases from the extreme thermophilic archaebacterium S. solfataricus.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

An 8.5-kDa ribonuclease from the extreme thermophilic archaebacterium Sulfolobus solfataricus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Isolation and structure of repressor-like proteins from the archaeon Sulfolobus solfataricus. Co-purification of RNase A with Sso7c

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

The Sso7d DNA-binding protein from Sulfolobus solfataricus has ribonuclease activity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

SaRD, a new protein isolated from the extremophile archaeon Sulfolobus acidocaldarius, is a thermostable ribonuclease with DNA-binding properties.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Overproduction of Sac7d and Sac7e reveals only Sac7e to be a DNA-binding protein with ribonuclease activity from the extremophilic archaeon Sulfolobus acidocaldarius.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Dehydrogenases from all three domains of life cleave RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Glyceraldehyde-3-phosphate dehydrogenase selectively binds AU-rich RNA in the NAD(+)-binding region (Rossmann fold).

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteroid dehydrogenases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

An archaeal protein with homology to the eukaryotic translation initiation factor 5A shows ribonucleolytic activity.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNase III processing of intervening sequences found in helix 9 of 23S rRNA in the alpha subclass of Proteobacteria.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Identification of mRNA that binds to eukaryotic initiation factor 5A by affinity co-purification and differential display

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Deoxyhypusine synthase gene is essential for cell viability in the yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Translation initiation factor 5A and its hypusine modification are essential for cell viability in the yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Posttranslational synthesis of hypusine: evolutionary progression and specificity of the hypusine modification

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

An exosome-like complex in Sulfolobus solfataricus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Protein complexes in the archaeon Methanothermobacter thermautotrophicus analyzed by blue native/SDS-PAGE and mass spectrometry

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

The archaeal exosome core is a hexameric ring structure with three catalytic subunits

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Structural framework for the mechanism of archaeal exosomes in RNA processing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Biochemical and serological evidence for an RNase E-like activity in halophilic Archaea

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

The Pyrococcus exosome complex: structural and functional characterization

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'-->5' exonuclease containing S1 and KH RNA-binding domains

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Structural basis of 3' end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

RNA channelling by the archaeal exosome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Insights into the mechanism of progressive RNA degradation by the archaeal exosome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Structural and biochemical characterization of the yeast exosome component Rrp40

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

The exosome: a macromolecular cage for controlled RNA degradation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

The exosome and the proteasome: nano-compartments for degradation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Exoribonuclease superfamilies: structural analysis and phylogenetic distribution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Evolutionary and functional genomics of the Archaea

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

Polyadenylated, noncapped RNA from the archaebacterium Methanococcus vannielii

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900807-6

7 January 2021

10.1016/S0079-6603(08)00807-6

Identifiers

DOI

1 reference

20 August 2017

1 reference