(Q37372252)

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Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions.

scientific article published on 16 March 2016

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Europe PubMed Central

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11 March 2020

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions (English)

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11 March 2020

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influenza A virus

object named as

Influenza A Virus

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based on heuristic

inferred from title

1

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11 March 2020

2

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11 March 2020

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11 March 2020

Kevan Hartshorn

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11 March 2020

8

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11 March 2020

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Mitchell R White

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11 March 2020

Nancy Leymarie

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11 March 2020

Robert J Woods

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11 March 2020

publication date

16 March 2016

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11 March 2020

Molecular & Cellular Proteomics

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11 March 2020

15

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11 March 2020

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11 March 2020

1895-1912

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11 March 2020

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

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XBP1s Links the Unfolded Protein Response to the Molecular Architecture of Mature N-Glycans

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Glycosylation Analysis of Engineered H3N2 Influenza A Virus Hemagglutinins with Sequentially Added Historically Relevant Glycosylation Sites.

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Enhanced Aromatic Sequons Increase Oligosaccharyltransferase Glycosylation Efficiency and Glycan Homogeneity

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Molecular Characterisation of the Haemagglutinin Glycan-Binding Specificity of Egg-Adapted Vaccine Strains of the Pandemic 2009 H1N1 Swine Influenza A Virus.

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Advances in LC-MS/MS-based glycoproteomics: getting closer to system-wide site-specific mapping of the N- and O-glycoproteome.

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Mutations flanking the carbohydrate binding site of surfactant protein D confer antiviral activity for pandemic influenza A viruses.

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Playing hide and seek: how glycosylation of the influenza virus hemagglutinin can modulate the immune response to infection.

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Vaccination of monoglycosylated hemagglutinin induces cross-strain protection against influenza virus infections.

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Importance of ligand conformational energies in carbohydrate docking: Sorting the wheat from the chaff

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Production and stabilization of the trimeric influenza hemagglutinin stem domain for potentially broadly protective influenza vaccines

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Preferential Recognition of Avian-Like Receptors in Human Influenza A H7N9 Viruses

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A single amino acid substitution in the hemagglutinin of H3N2 subtype influenza A viruses is associated with resistance to the long pentraxin PTX3 and enhanced virulence in mice

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Molecular Mechanisms of Inhibition of Influenza by Surfactant Protein D Revealed by Large-Scale Molecular Dynamics Simulation

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The amazing innate immune response to influenza A virus infection

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Absolute quantitation of immunoglobulin G and its glycoforms using multiple reaction monitoring.

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Structural determinants for naturally evolving H5N1 hemagglutinin to switch its receptor specificity

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N-linked glycosylation of the hemagglutinin protein influences virulence and antigenicity of the 1918 pandemic and seasonal H1N1 influenza A viruses

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Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza viruses

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Antigenically intact hemagglutinin in circulating avian and swine influenza viruses and potential for H3N2 pandemic

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Glycosylation on hemagglutinin affects the virulence and pathogenicity of pandemic H1N1/2009 influenza A virus in mice

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N-linked protein glycosylation in the ER.

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Toward animal cell culture-based influenza vaccine design: viral hemagglutinin N-glycosylation markedly impacts immunogenicity.

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Influenza-infected neutrophils within the infected lungs act as antigen presenting cells for anti-viral CD8(+) T cells

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Automated glycopeptide analysis--review of current state and future directions

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A Unique Sugar-binding Site Mediates the Distinct Anti-influenza Activity of Pig Surfactant Protein D

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Glycosylation at Asn91 of H1N1 haemagglutinin affects binding to glycan receptors.

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Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy.

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Mutagenesis of surfactant protein D informed by evolution and x-ray crystallography enhances defenses against influenza A virus in vivo

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The ability of pandemic influenza virus hemagglutinins to induce lower respiratory pathology is associated with decreased surfactant protein D binding

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Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain.

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Evolutionary dynamics of N-glycosylation sites of influenza virus hemagglutinin.

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6 September 2017

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Darwinian selection for sites of Asn-linked glycosylation in phylogenetically disparate eukaryotes and viruses.

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Influenza vaccine: the challenge of antigenic drift.

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6 September 2017

N-Glycan structure annotation of glycopeptides using a linearized glycan structure database (GlyDB)

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6 September 2017

Critical role of Arg/Lys343 in the species-dependent recognition of phosphatidylinositol by pulmonary surfactant protein D

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Virus glycosylation: role in virulence and immune interactions

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6 September 2017

Family 47 alpha-mannosidases in N-glycan processing

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6 September 2017

Nothing in glycobiology makes sense, except in the light of evolution

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6 September 2017

Contributions of phenylalanine 335 to ligand recognition by human surfactant protein D: ring interactions with SP-D ligands.

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6 September 2017

Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus

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6 September 2017

Advancing glycomics: implementation strategies at the consortium for functional glycomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

A single amino acid substitution in 1918 influenza virus hemagglutinin changes receptor binding specificity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Printed covalent glycan array for ligand profiling of diverse glycan binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Pulmonary collectins modulate strain-specific influenza a virus infection and host responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Roles of N-linked glycans in the endoplasmic reticulum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Influenza vaccine--outmaneuvering antigenic shift and drift

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

N-glycosylation is crucial for folding, trafficking, and stability of human tripeptidyl-peptidase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Error tolerant searching of uninterpreted tandem mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Sialic acid species as a determinant of the host range of influenza A viruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Degradation of misfolded endoplasmic reticulum glycoproteins in Saccharomyces cerevisiae is determined by a specific oligosaccharide structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Changes in the hemagglutinin molecule of influenza type A (H3N2) virus associated with increased virulence for mice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Evaluation of comparative protein modeling by MODELLER

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

A serum mannose-binding lectin mediates complement-dependent lysis of influenza virus-infected cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Influenza virus strains selectively recognize sialyloligosaccharides on human respiratory epithelium; the role of the host cell in selection of hemagglutinin receptor specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Evidence for a protective role of pulmonary surfactant protein D (SP-D) against influenza A viruses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Bovine and mouse serum beta inhibitors of influenza A viruses are mannose-binding lectins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Two distinct serum mannose-binding lectins function as beta inhibitors of influenza virus: identification of bovine serum beta inhibitor as conglutinin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

6 September 2017

Increasing antiviral activity of surfactant protein d trimers by introducing residues from bovine serum collectins: dissociation of mannan-binding and antiviral activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

14 September 2017

The influenza A virus hemagglutinin glycosylation state affects receptor-binding specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

14 September 2017

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

14 September 2017

Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

14 September 2017

Single amino acid substitutions in influenza haemagglutinin change receptor binding specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

14 September 2017

A predictive fitness model for influenza

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

26 June 2018

Byonic: advanced peptide and protein identification software

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

26 June 2018

Mechanisms of anti-influenza activity of surfactant proteins A and D: comparison with serum collectins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

26 June 2018

Influenza: Pathways to human adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

Automated N-glycopeptide identification using a combination of single- and tandem-MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

Glycan microarray technologies: tools to survey host specificity of influenza viruses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

Algorithms for automatic interpretation of high resolution mass spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

Ligand specificity of human surfactant protein D: expression of a mutant trimeric collectin that shows enhanced interactions with influenza A virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

Unimod: Protein modifications for mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5083086

2 September 2018

The structure and role of the carbohydrate moieties of influenza virus haemagglutinin

1 reference

https://pubmed.ncbi.nlm.nih.gov/26984886

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.M116.058016

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26984886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26984886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26984886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

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