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English
An iterative method for extracting energy-like quantities from protein structures.
scientific article published on October 1996
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
title
An iterative method for extracting energy-like quantities from protein structures
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
main subject
protein structure
0 references
author
Paul D Thomas
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
Ken A. Dill
series ordinal
2
object named as
K A Dill
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
language of work or name
English
0 references
publication date
1 October 1996
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
published in
Proceedings of the National Academy of Sciences of the United States of America
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
volume
93
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
issue
21
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
page(s)
11628-11633
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
cites work
Energy functions that discriminate X-ray and near native folds from well-constructed decoys
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
An empirical energy function for threading protein sequence through the folding motif
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Reduced representation model of protein structure prediction: statistical potential and genetic algorithms
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Enlarged representative set of protein structures
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Exploring conformational space with a simple lattice model for protein structure
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Knowledge-based potentials for proteins
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
A computer model to dynamically simulate protein folding: studies with crambin.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
6 September 2017
A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
A new approach to protein fold recognition
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Protein tertiary structure recognition using optimized Hamiltonians with local interactions
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6 September 2017
The Protein Data Bank: a computer-based archival file for macromolecular structures
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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6 September 2017
Structure-derived potentials and protein simulations
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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28 September 2017
Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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28 September 2017
Computer modeling of protein folding: conformational and energetic analysis of reduced and detailed protein models
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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26 June 2018
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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26 June 2018
Contact potential that recognizes the correct folding of globular proteins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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26 June 2018
Simulations of the folding of a globular protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
3 September 2018
Statistical potentials extracted from protein structures: how accurate are they?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
3 September 2018
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
3 September 2018
Global optimum protein threading with gapped alignment and empirical pair score functions.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
3 September 2018
Computer simulation of antibody binding specificity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
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3 September 2018
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
3 September 2018
Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
3 September 2018
Conformations of folded proteins in restricted spaces
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109
retrieved
3 September 2018
Correctly folded proteins make twice as many hydrophobic contacts
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8876187
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A potential function for conformational analysis of proteins
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8876187
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8876187
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1073/PNAS.93.21.11628
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
ADS bibcode
1996PNAS...9311628T
0 references
PMC publication ID
38109
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
PubMed publication ID
8876187
1 reference
stated in
Europe PubMed Central
PMC publication ID
38109
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 October 2019
ResearchGate publication ID
14331082
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