(Q36900933)

17 August 2017

Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment (English)

1 reference

17 August 2017

0 references

Maciej Swat

1 reference

17 August 2017

James A Glazier

1 reference

17 August 2017

Nikodem J Popławski

1 reference

17 August 2017

Abbas Shirinifard

series ordinal

1 reference

17 August 2017

1 April 2008

1 reference

Mathematical Biosciences and Engineering

17 August 2017

1 reference

17 August 2017

1 reference

17 August 2017

1 reference

17 August 2017

355-388

1 reference

maintained by WikiProject

17 August 2017

WikiProject Mathematics

0 references

cites work

Dynamic mechanisms of blood vessel growth.

1 reference

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Viscous instabilities in flowing foams: a Cellular Potts Model approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

On multiscale approaches to three-dimensional modelling of morphogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Dynamics of development and dispersal in sessile microbial communities: examples from Pseudomonas aeruginosa and Pseudomonas putida model biofilms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Moving forward moving backward: directional sorting of chemotactic cells due to size and adhesion differences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

A multiscale model for avascular tumor growth

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

From a discrete to a continuous model of biological cell movement

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Engineering biological structures of prescribed shape using self-assembling multicellular systems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Multilevel selection in models of prebiotic evolution: compartments and spatial self-organization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Mathematical modelling of biofilm structures.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

How amoeboids self-organize into a fruiting body: multicellular coordination in Dictyostelium discoideum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Diffusion and deformations of single hydra cells in cellular aggregates.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Simulation of biological cell sorting using a two-dimensional extended Potts model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Viscoelastic properties of living embryonic tissues: a quantitative study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Overview of microbial biofilms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Physics of chemoreception

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Control of epidermal stem cell clusters by Notch-mediated lateral induction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Growth and substrate consumption of Nitrobacter agilis cells immobilized in carrageenan: part 1. Dynamic modeling.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

A multispecies biofilm model.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

A multidimensional multispecies continuum model for heterogeneous biofilm development.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

A framework for three-dimensional simulation of morphogenesis

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Modelling in vitro lung branching morphogenesis during development

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Three-dimensional biofilm model with individual cells and continuum EPS matrix.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Role of physical mechanisms in biological self-organization

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Solving the advection-diffusion equations in biological contexts using the cellular Potts model.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

A framework for multidimensional modelling of activity and structure of multispecies biofilms.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Tamoxifen treatment failure in cancer and the nonlinear dynamics of TGFbeta

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

CompuCell, a multi-model framework for simulation of morphogenesis

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Nonlinear simulation of tumor growth

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Depletion of FGF acts as a lateral inhibitory factor in lung branching morphogenesis in vitro.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Intercellular adhesion and cancer invasion: a discrete simulation using the extended Potts model.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Modelling Dictyostelium discoideum morphogenesis: the culmination.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Computing an organism: on the interface between informatic and dynamic processes

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Individual-based modelling of biofilms.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

A simple 2D biofilm model yields a variety of morphological features

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Two-dimensional model of biofilm detachment caused by internal stress from liquid flow.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Effect of diffusive and convective substrate transport on biofilm structure formation: a two-dimensional modeling study.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Cellular growth in biofilms.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

A new combined differential-discrete cellular automaton approach for biofilm modeling: application for growth in gel beads.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Surface tensions of embryonic tissues predict their mutual envelopment behavior.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Generic modelling of cooperative growth patterns in bacterial colonies.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547990

Fluctuations in viscous fingering

4 September 2018

1 reference

12 December 2020

Liquid properties of embryonic tissues: Measurement of interfacial tensions

1 reference

12 December 2020

Evolving mechanisms of morphogenesis: on the interplay between differential adhesion and cell differentiation

1 reference

12 December 2020

Grain growth in three dimensions depends on grain topology

1 reference

12 December 2020

Analysis of a pattern-forming lattice-gas automaton: Mean-field theory and beyond

1 reference

12 December 2020

Effects of biofilm structures on oxygen distribution and mass transport

1 reference

12 December 2020

Effects of lattice anisotropy and temperature on domain growth in the two-dimensional Potts model

1 reference

12 December 2020

A hybrid mathematical model of solid tumour invasion: the importance of cell adhesion

1 reference

12 December 2020

Reconstruction of tissues by dissociated cells. Some morphogenetic tissue movements and the sorting out of embryonic cells may have a common explanation

1 reference

12 December 2020

Adhesion between cells, diffusion of growth factors, and elasticity of the AER produce the paddle shape of the chick limb

1 reference

12 December 2020

Quantitative comparison between differential adhesion models and cell sorting in the presence and absence of fluctuations

1 reference

12 December 2020

Rippling patterns in aggregates of myxobacteria arise from cell-cell collisions

1 reference

12 December 2020

Hysteresis and avalanches in two-dimensional foam rheology simulations

1 reference

12 December 2020

Model of convergent extension in animal morphogenesis

1 reference

12 December 2020

A spatial model of germinal center reactions: cellular adhesion based sorting of B cells results in efficient affinity maturation

1 reference

12 December 2020

Single cell motion in aggregates of embryonic cells

1 reference

12 December 2020

Simulation of the differential adhesion driven rearrangement of biological cells

1 reference

12 December 2020

Simulating convergent extension by way of anisotropic differential adhesion

1 reference

12 December 2020

Identifiers

DOI

10.3934/MBE.2008.5.355

1 reference

17 August 2017

1 reference

17 August 2017

PubMed publication ID

18613738

1 reference