(Q36861970)

16 August 2017

Biological imaging software tools (English)

1 reference

16 August 2017

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16 August 2017

1 reference

16 August 2017

Ilya G Goldberg

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Anne E Carpenter

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Kevin W Eliceiri

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Berthold MR

1 reference

16 August 2017

Ibáñez L

1 reference

16 August 2017

Manjunath BS

1 reference

16 August 2017

Murphy RF

1 reference

16 August 2017

Peng H

1 reference

16 August 2017

Plant AL

1 reference

16 August 2017

Roysam B

1 reference

16 August 2017

Stuurman N

1 reference

16 August 2017

Tomancak P

1 reference

16 August 2017

language of work or name

English

0 references

publication date

28 June 2012

1 reference

16 August 2017

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16 August 2017

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16 August 2017

1 reference

16 August 2017

697-710

1 reference

describes a project that uses

16 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3659807/fullTextXML

inferred from PubMed Central ID database lookup

cites work

FluoRender: An Application of 2D Image Space Methods for 3D and 4D Confocal Microscopy Data Visualization in Neurobiology Research.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

NIH Image to ImageJ: 25 years of image analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Icy: an open bioimage informatics platform for extended reproducible research.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Fiji: an open-source platform for biological-image analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

A call for bioimaging software usability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

OMERO: flexible, model-driven data management for experimental biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

New concepts for building vocabulary for cell image ontologies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Simultaneous recognition and segmentation of cells: application in C.elegans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

An active role for machine learning in drug development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Model building and intelligent acquisition with application to protein subcellular location classification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Fast, three-dimensional super-resolution imaging of live cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Robust, globally consistent and fully automatic multi-image registration and montage synthesis for 3-D multi-channel images

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Micropilot: automation of fluorescence microscopy-based imaging for systems biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Pattern recognition software and techniques for biological image analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Computer control of microscopes using µManager

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Bimolecular fluorescence complementation analysis of eukaryotic fusion products

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Metadata matters: access to image data in the real world

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

EBImage--an R package for image processing with applications to cellular phenotypes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Visualization of image data from cells to organisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Bisque: a platform for bioimage analysis and management

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

A 3D digital atlas of C. elegans and its application to single-cell analyses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

CATMAID: collaborative annotation toolkit for massive amounts of image data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Globally optimal stitching of tiled 3D microscopic image acquisitions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Quantitative image analysis reveals distinct structural transitions during aging in Caenorhabditis elegans tissues

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Wndchrm - an open source utility for biological image analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Bioimage informatics: a new area of engineering biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Stepping into the third dimension.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

29 September 2017

ImageJ for microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Automated subcellular location determination and high-throughput microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Ultra-high resolution imaging by fluorescence photoactivation localization microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Objective clustering of proteins based on subcellular location patterns

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

OsiriX: an open-source software for navigating in multidimensional DICOM images

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

From quantitative microscopy to automated image understanding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

ScanImage: flexible software for operating laser scanning microscopes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Human vs machine: evaluation of fluorescence micrographs.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Computer visualization of three-dimensional image data using IMOD

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

BioImageXD: an open, general-purpose and high-throughput image-processing platform.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Elastic volume reconstruction from series of ultra-thin microscopy sections.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Software for bead-based registration of selective plane illumination microscopy data

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Reconstruct: a free editor for serial section microscopy

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Multidimensional drug profiling by automated microscopy.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659807

Determining the distribution of probes between different subcellular locations through automated unmixing of subcellular patterns

4 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2084

Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2084

Current challenges in open-source bioimage informatics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2084

Statistical learning analysis in neuroscience: aiming for transparency

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2084

Finding an image in a haystack: the case for public image repositories

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2084

Ontologies for Neuroscience: What are they and What are they Good for?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22743775

12 December 2020

inferred from PubMed ID database lookup

Image-based multivariate profiling of drug responses from single cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22743775

12 December 2020

inferred from PubMed ID database lookup

Principles of Fluorescence Spectroscopy

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2084

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NMETH.2084

1 reference

Dimensions Publication ID

16 August 2017

0 references

1 reference

16 August 2017

PubMed publication ID

22743775

1 reference