(Q36367497)

13 August 2017

Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections (English)

1 reference

13 August 2017

1 reference

1 reference

Ben Pascoe

1 reference

13 August 2017

Bethany L Dearlove

0 references

Alison J Cody

0 references

Samuel K Sheppard

0 references

Daniel J Wilson

0 references

Guillaume Méric

1 reference

13 August 2017

25 August 2015

1 reference

13 August 2017

1 reference

13 August 2017

1 reference

13 August 2017

1 reference

13 August 2017

721-729

1 reference

Creative Commons Attribution 4.0 International

13 August 2017

start time

25 August 2015

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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Bacterial phylogenetic reconstruction from whole genomes is robust to recombination but demographic inference is not.

30 September 2017

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Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

30 September 2017

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Whole-genome sequencing shows that patient-to-patient transmission rarely accounts for acquisition of Staphylococcus aureus in an intensive care unit

30 September 2017

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Diverse sources of C. difficile infection identified on whole-genome sequencing

30 September 2017

1 reference

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Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

30 September 2017

1 reference

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Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing

30 September 2017

1 reference

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Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds.

30 September 2017

1 reference

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Progressive genome-wide introgression in agricultural Campylobacter coli

30 September 2017

1 reference

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Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

30 September 2017

1 reference

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Transforming clinical microbiology with bacterial genome sequencing.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Bayesian phylogenetics with BEAUti and the BEAST 1.7

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Marked campylobacteriosis decline after interventions aimed at poultry, New Zealand

30 September 2017

1 reference

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BIGSdb: Scalable analysis of bacterial genome variation at the population level.

30 September 2017

1 reference

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Phylodynamics and human-mediated dispersal of a zoonotic virus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Evolution of MRSA during hospital transmission and intercontinental spread

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Bayesian phylogeography finds its roots

30 September 2017

1 reference

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Campylobacter genotyping to determine the source of human infection.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Tracing the source of campylobacteriosis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Host-associated genetic import in Campylobacter jejuni

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Inference of bacterial microevolution using multilocus sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Temporal trends in gonococcal population genetics in a high prevalence urban community

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Relaxed phylogenetics and dating with confidence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Fresh chicken as main risk factor for campylobacteriosis, Denmark

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Characterization of Waterborne Outbreak–associatedCampylobacter jejuni, Walkerton, Ontario

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Campylobacter jejuni Infections: update on emerging issues and trends

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

A fast algorithm for joint reconstruction of ancestral amino acid sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Outbreaks of campylobacter infection: rare events for a common pathogen

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Water-borne outbreak of campylobacter gastroenteritis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Assigning the source of human campylobacteriosis in New Zealand: a comparative genetic and epidemiological approach.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Fast, accurate and simulation-free stochastic mapping

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Counting labeled transitions in continuous-time Markov models of evolution

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

A case-control study of risk factors for sporadic campylobacter infections in Denmark.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

Water-borne Campylobacter jejuni infection in a Danish town---a 6-week continuous source outbreak

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4677457

The role of poultry and meats in the etiology of Campylobacter jejuni/coli enteritis

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26305157

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2015.149

1 reference

release_jtbecx6jcbdlrngeovsmvw7o4y

13 August 2017

1 reference

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jtbecx6jcbdlrngeovsmvw7o4y

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

13 August 2017

PubMed publication ID

26305157

1 reference