(Q35977668)

11 August 2017

Coarse-grained sequences for protein folding and design (English)

1 reference

11 August 2017

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Scott Brown

1 reference

11 August 2017

Nicolas J Fawzi

series ordinal

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11 August 2017

Teresa Head-Gordon

series ordinal

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11 August 2017

language of work or name

English

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publication date

8 September 2003

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Proceedings of the National Academy of Sciences of the United States of America

11 August 2017

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11 August 2017

100

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11 August 2017

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11 August 2017

10712-10717

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Minimalist models for protein folding and design

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Thoroughly sampling sequence space: large-scale protein design of structural ensembles

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

The origins of asymmetry in the folding transition states of protein L and protein G.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Computer-based redesign of a protein folding pathway

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Matching simulation and experiment: a new simplified model for simulating protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

A polar, solvent-exposed residue can be essential for native protein structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Redesigning the hydrophobic core of a model beta-sheet protein: destabilizing traps through a threading approach

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Are protein folds atypical?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Simplified proteins: minimalist solutions to the 'protein folding problem'.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

An Early Intermediate in the Folding Reaction of the B1 Domain of Protein G Contains a Native-like Core

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Theory of protein folding: the energy landscape perspective

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Active barnase variants with completely random hydrophobic cores

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Three-dimensional solution structure of an immunoglobulin light chain-binding domain of protein L. Comparison with the IgG-binding domains of protein G

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Theoretical Studies of Protein Folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Metastability of the folded states of globular proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

2 October 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Protein engineering study of protein L by simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Critical role of beta-hairpin formation in protein G folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Rattle: A “velocity” version of the shake algorithm for molecular dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Evolutionary conservation of the folding nucleus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Protein design by binary patterning of polar and nonpolar amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Toward minimalist models of larger proteins: a ubiquitin-like protein

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196869

Kinetics of Folding of the IgG Binding Domain of Peptostreptoccocal Protein L

24 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

A breakdown of symmetry in the folding transition state of protein L

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Multidimensional free-energy calculations using the weighted histogram analysis method

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Optimized Monte Carlo data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

The folding mechanism of a beta-sheet: the WW domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Designability of protein structures: a lattice-model study using the Miyazawa-Jernigan matrix

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1931882100

21 January 2018

Identifiers

DOI

10.1073/PNAS.1931882100

1 reference

11 August 2017

0 references

1 reference

11 August 2017

PubMed publication ID

12963815

1 reference