(Q35763781)

English

A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison

scientific article published on May 25, 1991

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Europe PubMed Central

PubMed publication ID

10 August 2017

A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison (English)

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

1 reference

based on heuristic

inferred from title

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10.1093/NAR/19.10.2707

https://api.crossref.org/works/10.1093/NAR/19.10.2707

5 November 2022

author name string

M. Zuker

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1710343

5 November 2022

J. A. Jaeger

2

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1710343

5 November 2022

D. H. Turner

3

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1710343

5 November 2022

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publication date

1 May 1991

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Europe PubMed Central

PubMed publication ID

10 August 2017

25 May 1991

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National Center for Biotechnology Information

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=1710343

5 November 2022

full work available at URL

https://europepmc.org/articles/PMC328190

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Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1710343

5 November 2022

https://europepmc.org/articles/PMC328190?pdf=render

Portable Document Format

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Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1710343

5 November 2022

http://academic.oup.com/nar/article-pdf/19/10/2707/6180664/19-10-2707.pdf

Portable Document Format

1 reference

10.1093/NAR/19.10.2707

https://api.crossref.org/works/10.1093/NAR/19.10.2707

5 November 2022

Nucleic Acids Research

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

19

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

2707-2714

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

Secondary structure of 16S ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Fast algorithm for predicting the secondary structure of single-stranded RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Estimation of Secondary Structure in Ribonucleic Acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Structure of yeast phenylalanine tRNA at 3 Å resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Three-Dimensional Structure of Yeast Phenylalanine Transfer RNA: Folding of the Polynucleotide Chain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Comparative anatomy of 16-S-like ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Structural conservation among three homologous introns of bacteriophage T4 and the group I introns of eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Characterization of RNA hairpin loop stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

A dynamic programming algorithm for finding alternative RNA secondary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Improved predictions of secondary structures for RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

On finding all suboptimal foldings of an RNA molecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Probing the structure of RNAs in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Polymer-supported RNA synthesis and its application to test the nearest-neighbor model for duplex stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Improved free-energy parameters for predictions of RNA duplex stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Role of conserved sequence elements 9L and 2 in self-splicing of the Tetrahymena ribosomal RNA precursor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Sequence-dependent structural variations of hammerhead RNA enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

2 October 2017

Phylogenetic comparative analysis of RNA secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

12 July 2018

Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

12 July 2018

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

12 July 2018

17 Predicting optimal and suboptimal secondary structure for RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

12 July 2018

Long-range intron-exon and intron-intron pairings involved in self-splicing of class II catalytic introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=328190

15 November 2018

Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

1 reference

https://pubmed.ncbi.nlm.nih.gov/1710343

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Higher order structure of chloroplastic 5S ribosomal RNA from spinach

1 reference

https://pubmed.ncbi.nlm.nih.gov/1710343

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension

1 reference

https://pubmed.ncbi.nlm.nih.gov/1710343

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Energetics of internal GU mismatches in ribooligonucleotide helixes

1 reference

https://pubmed.ncbi.nlm.nih.gov/1710343

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of yeast tRNAAsp

1 reference

https://pubmed.ncbi.nlm.nih.gov/1710343

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate

1 reference

https://pubmed.ncbi.nlm.nih.gov/1710343

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/19.10.2707

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

ResearchGate publication ID

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