(Q35743750)

10 August 2017

1 reference

title

New advances in normal mode analysis of supermolecular complexes and applications to structural refinement (English)

1 reference

10 August 2017

Jianpeng Ma

1 reference

10 August 2017

publication date

1 April 2004

1 reference

Current Protein and Peptide Science

10 August 2017

published in

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10 August 2017

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10 August 2017

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10 August 2017

page(s)

119-123

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Refinement of F-actin model against fiber diffraction data by long-range normal modes

10 August 2017

cites work

1 reference

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Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

27 July 2018

1 reference

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Simulation of F-actin filaments of several microns

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

The missing link between thermodynamics and structure in F1-ATPase

27 July 2018

1 reference

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Substructure synthesis method for simulating large molecular complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Domain movements in human fatty acid synthase by quantized elastic deformational model

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Quaternary structure of human fatty acid synthase by electron cryomicroscopy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Conformational change of proteins arising from normal mode calculations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Anisotropy of fluctuation dynamics of proteins with an elastic network model

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

SCOP: a structural classification of proteins database for the investigation of sequences and structures

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

The hinge-bending mode of a lysozyme-inhibitor complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Langevin modes of macromolecules: applications to crambin and DNA hexamers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Deoxymyoglobin studied by the conformational normal mode analysis. I. Dynamics of globin and the heme-globin interaction.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Deoxymyoglobin studied by the conformational normal mode analysis. II. The conformational change upon oxygenation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

;Neural-gas' network for vector quantization and its application to time-series prediction.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Experimental verification of conformational variation of human fatty acid synthase as predicted by normal mode analysis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantised elastic deformational model

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

How to describe protein motion without amino acid sequence and atomic coordinates.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Molecular mechanisms of chaperonin GroEL-GroES function

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Building-block approach for determining low-frequency normal modes of macromolecules.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Analysis of domain motions by approximate normal mode calculations

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Ligand-induced conformational changes in ras p21: a normal mode and energy minimization analysis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Analysis of the low frequency normal modes of the T-state of aspartate transcarbamylase.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Essential dynamics of proteins

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688808

Inclusion of thermal motion in crystallographic structures by restrained molecular dynamics

15 November 2018

1 reference

12 December 2020

Tertiary and quaternary conformational changes in aspartate transcarbamylase: a normal mode study

1 reference

12 December 2020

Mega-Dalton Biomolecular Motion Captured from Electron Microscopy Reconstructions

1 reference

12 December 2020

Flexibility of alpha-helices: results of a statistical analysis of database protein structures

1 reference

12 December 2020

A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase

1 reference

12 December 2020

Analysis of the low-frequency normal modes of the R state of aspartate transcarbamylase and a comparison with the T state modes

1 reference

12 December 2020

Resolution measurement in structures derived from single particles

1 reference

12 December 2020

Inelastic neutron scattering analysis of picosecond internal protein dynamics

1 reference

12 December 2020

Identifiers

DOI

10.2174/1389203043486892

1 reference

10 August 2017

1 reference

10 August 2017

1 reference