(Q35025140)

5 August 2017

title

NikR-operator complex structure and the mechanism of repressor activation by metal ions (English)

1 reference

5 August 2017

Sheila C Wang

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Eric R Schreiter

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Deborah B Zamble

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Catherine L Drennan

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5 August 2017

language of work or name

English

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publication date

31 August 2006

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Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

published in

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5 August 2017

volume

103

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5 August 2017

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5 August 2017

page(s)

13676-13681

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The metal- and DNA-binding activities of Helicobacter pylori NikR.

5 August 2017

cites work

1 reference

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In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori

8 July 2018

1 reference

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The nickel-responsive regulator NikR controls activation and repression of gene transcription in Helicobacter pylori

8 July 2018

1 reference

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Protease digestion analysis of Escherichia coli NikR: evidence for conformational stabilization with Ni(II).

8 July 2018

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Structure of Pyrococcus horikoshii NikR: nickel sensing and implications for the regulation of DNA recognition.

8 July 2018

1 reference

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A high-performance liquid chromatography method for determining transition metal content in proteins

8 July 2018

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The CCP4 suite: programs for protein crystallography

8 July 2018

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Likelihood-enhanced fast rotation functions

8 July 2018

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Crystal structure of the nickel-responsive transcription factor NikR

8 July 2018

1 reference

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Characterization of the roles of NikR, a nickel-responsive pleiotropic autoregulator of Helicobacter pylori

8 July 2018

1 reference

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Nickel uptake and utilization by microorganisms

8 July 2018

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The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR

8 July 2018

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Regulation of high affinity nickel uptake in bacteria. Ni2+-Dependent interaction of NikR with wild-type and mutant operator sites

8 July 2018

1 reference

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Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system

8 July 2018

1 reference

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Sigma2R, a reciprocal-space measure of the quality of macromolecular electron-density maps

8 July 2018

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XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density

8 July 2018

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Rapid automated molecular replacement by evolutionary search

8 July 2018

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Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564233

The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator

8 July 2018

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

8 July 2018

1 reference

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Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564233

DNA recognition by beta-sheets in the Arc repressor-operator crystal structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564233

The nik operon of Escherichia coli encodes a periplasmic binding-protein-dependent transport system for nickel

8 July 2018

1 reference

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Cation transport in Escherichia coli. VI. K exchange

8 July 2018

1 reference

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The crystal structure of trp aporepressor at 1.8 A shows how binding tryptophan enhances DNA affinity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564233

Crystal structure of trp repressor/operator complex at atomic resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564233

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

8 July 2018

1 reference

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Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564233

Crystal structure of the met repressor-operator complex at 2.8 A resolution reveals DNA recognition by beta-strands

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564233

NikR repressor: high-affinity nickel binding to the C-terminal domain regulates binding to operator DNA.

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606247103

Selectivity of metal binding and metal-induced stability of Escherichia coli NikR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606247103

Metal-selective DNA-binding response of Escherichia coli NikR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606247103

Nickel coordination is regulated by the DNA-bound state of NikR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606247103

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606247103

Metal-ligand geometry relevant to proteins and in proteins: sodium and potassium

21 January 2018

1 reference

12 December 2020

Phase combination and cross validation in iterated density-modification calculations

1 reference

12 December 2020

NikR-mediated regulation of Helicobacter pylori acid adaptation

1 reference

12 December 2020

Coordination geometries of selected transition metal ions (Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+) in metalloproteins

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0606247103

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference