(Q34445032)

2 August 2017

title

Lineage-specific responses of microbial communities to environmental change (English)

1 reference

2 August 2017

1 reference

Jordan S Read

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Katherine D McMahon

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Ashley Shade

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Nicholas D Youngblut

1 reference

2 August 2017

Rachel J Whitaker

series ordinal

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2 August 2017

language of work or name

English

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publication date

12 October 2012

1 reference

Applied and Environmental Microbiology

2 August 2017

published in

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2 August 2017

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2 August 2017

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2 August 2017

page(s)

39-47

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describes a project that uses

2 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=3536104

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The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living polynucleobacter population

6 July 2018

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Old and new challenges in using species diversity for assessing biodiversity

6 July 2018

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Drivers of bacterial beta-diversity depend on spatial scale

6 July 2018

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Resolving difficult phylogenetic questions: why more sequences are not enough

6 July 2018

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Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis

6 July 2018

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6 July 2018

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Removing noise from pyrosequenced amplicons

6 July 2018

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

6 July 2018

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Ubiquity of Polynucleobacter necessarius subspecies asymbioticus results from ecological diversification

6 July 2018

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Examining the global distribution of dominant archaeal populations in soil

6 July 2018

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6 July 2018

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QIIME allows analysis of high-throughput community sequencing data

6 July 2018

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Bacterial community variation in human body habitats across space and time

6 July 2018

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

6 July 2018

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Seasonal and episodic lake mixing stimulate differential planktonic bacterial dynamics

6 July 2018

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Involvement of cell surface structures in size-independent grazing resistance of freshwater Actinobacteria

6 July 2018

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Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus

6 July 2018

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Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities

6 July 2018

1 reference

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Colloquium paper: resistance, resilience, and redundancy in microbial communities

6 July 2018

1 reference

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Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

6 July 2018

1 reference

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Microbial population structures in the deep marine biosphere

6 July 2018

1 reference

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Phylogenetic ecology of the freshwater Actinobacteria acI lineage

6 July 2018

1 reference

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A systematics for discovering the fundamental units of bacterial diversity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Compensatory dynamics are rare in natural ecological communities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

The bacterial species definition in the genomic era.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Low intraspecific diversity in a polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

CDD: a Conserved Domain Database for protein classification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Cytoscape: a software environment for integrated models of biomolecular interaction networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Whole genome plasticity in pathogenic bacteria.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Global patterns in the biogeography of bacterial taxa

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Systematic artifacts in metagenomes from complex microbial communities

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

High predictability of the seasonal dynamics of a species-like Polynucleobacter population in a freshwater lake

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3536104

9 December 2018

Identifiers

DOI

10.1128/AEM.02226-12

1 reference

2 August 2017

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2 August 2017

1 reference