(Q34333925)

1 August 2017

title

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics (English)

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1 August 2017

1 reference

Ruedi Aebersold

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1 August 2017

Eric W Deutsch

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1 August 2017

Ulrike Kusebauch

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1 August 2017

Christine Carapito

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Hannes Röst

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Ruth Hüttenhain

1 reference

1 August 2017

Martin Soste

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1 August 2017

Nathalie Selevsek

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1 August 2017

Atul Sethi

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1 August 2017

Terry Farrah

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1 August 2017

Robert L Moritz

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1 August 2017

Emma Niméus-Malmström

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1 August 2017

Oliver Rinner

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1 August 2017

language of work or name

English

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publication date

1 July 2012

1 reference

Science Translational Medicine

1 August 2017

published in

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1 August 2017

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1 August 2017

issue

142

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1 August 2017

page(s)

142ra94

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describes a project that uses

1 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

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6 July 2018

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6 July 2018

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6 July 2018

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On the Development of Plasma Protein Biomarkers

6 July 2018

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The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline

6 July 2018

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The road from discovery to clinical diagnostics: lessons learned from the first FDA-cleared in vitro diagnostic multivariate index assay of proteomic biomarkers

6 July 2018

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Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma

6 July 2018

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Depletion of abundant plasma proteins and limitations of plasma proteomics.

6 July 2018

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6 July 2018

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Integrative proteomic analysis of serum and peritoneal fluids helps identify proteins that are up-regulated in serum of women with ovarian cancer

6 July 2018

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Quantitative proteomic analysis by iTRAQ(R) for the identification of candidate biomarkers in ovarian cancer serum

6 July 2018

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A human functional protein interaction network and its application to cancer data analysis

6 July 2018

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Concentration and Preservation of Very Low Abundance Biomarkers in Urine, such as Human Growth Hormone (hGH), by Cibacron Blue F3G-A Loaded Hydrogel Particles

6 July 2018

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Automated network analysis identifies core pathways in glioblastoma

6 July 2018

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6 July 2018

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An integrative -omics approach to identify functional sub-networks in human colorectal cancer

6 July 2018

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6 July 2018

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The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum

6 July 2018

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Perspectives of targeted mass spectrometry for protein biomarker verification

6 July 2018

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A list of candidate cancer biomarkers for targeted proteomics

6 July 2018

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Comprehensive analysis of conditioned media from ovarian cancer cell lines identifies novel candidate markers of epithelial ovarian cancer

6 July 2018

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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

6 July 2018

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6 July 2018

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6 July 2018

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Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Preoperative serum tetranectin, CA125 and menopausal status used as single markers in screening and in a risk assessment index (RAI) in discriminating between benign and malignant ovarian tumors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Quantifying proteins by mass spectrometry: the selectivity of SRM is only part of the problem

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

A human proteome detection and quantitation project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Mining the ovarian cancer ascites proteome for potential ovarian cancer biomarkers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

A database of mass spectrometric assays for the yeast proteome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Selected reaction monitoring for quantitative proteomics: a tutorial

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Core signaling pathways in human pancreatic cancers revealed by global genomic analyses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

An integrated genomic analysis of human glioblastoma multiforme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Proteomic analysis of ovarian cancer cells reveals dynamic processes of protein secretion and shedding of extra-cellular domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Protein networks in disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Smart hydrogel particles: biomarker harvesting: one-step affinity purification, size exclusion, and protection against degradation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Network-based classification of breast cancer metastasis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

The genomic landscapes of human breast and colorectal cancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: application to 300- and 100-A pore size C18 sorbents

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Use of peptide retention time prediction for protein identification by off-line reversed-phase HPLC-MALDI MS/MS.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Biomarkers in cancer staging, prognosis and treatment selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Human Plasma PeptideAtlas

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Scoring proteomes with proteotypic peptide probes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Cytoscape: a software environment for integrated models of biomolecular interaction networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

The human plasma proteome: history, character, and diagnostic prospects

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

The SPOT-synthesis technique. Synthetic peptide arrays on membrane supports--principles and applications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Coherent membrane supports for parallel microsynthesis and screening of bioactive peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3766734

Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.

6 July 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3003989

Mouse model of human ovarian endometrioid adenocarcinoma based on somatic defects in the Wnt/beta-catenin and PI3K/Pten signaling pathways.

21 January 2018

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https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3003989

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

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https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3003989

Integrated genomic analyses of ovarian carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3003989

High-abundance proteins depletion for serum proteomic analysis: concomitant removal of non-targeted proteins.

21 January 2018

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https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3003989

Serum lipids concentration in women with benign and malignant ovarian tumours.

21 January 2018

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https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3003989

Head-to-Head Comparison of Serum Fractionation Techniques

21 January 2018

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https://api.crossref.org/works/10.1126%2FSCITRANSLMED.3003989

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

21 January 2018

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12 December 2020

Proteomic approaches to tumor marker discovery

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12 December 2020

Systematic quantification of peptides/proteins in urine using selected reaction monitoring

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12 December 2020

How specific is my SRM?: The issue of precursor and product ion redundancy

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12 December 2020

Three Biomarkers Identified from Serum Proteomic Analysis for the Detection of Early Stage Ovarian Cancer

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12 December 2020

A computational tool to detect and avoid redundancy in selected reaction monitoring

2 references

5 May 2024

https://opencitations.net/index/api/v1/references/10.1126/SCITRANSLMED.3003989

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1074/MCP.M111.013045

Identifiers

DOI

10.1126/SCITRANSLMED.3003989

1 reference

1 August 2017

1 reference

1 August 2017

1 reference