(Q34310778)

1 August 2017

title

Exploring residue component contributions to dynamical network models of allostery (English)

1 reference

1 August 2017

author

Zaida Luthey-Schulten

series ordinal

object named as

Zaida Luthey-Schulten

1 reference

1 August 2017

John Eargle

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1 August 2017

Adam T Vanwart

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1 August 2017

Rommie E Amaro

series ordinal

1 reference

1 August 2017

publication date

5 July 2012

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Journal of Chemical Theory and Computation

1 August 2017

published in

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1 August 2017

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1 August 2017

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1 August 2017

page(s)

2949-2961

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50th anniversary of the word “allosteric”

1 August 2017

cites work

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Small-molecule inhibitors of protein-protein interactions: progressing towards the dream

6 July 2018

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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

6 July 2018

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Allosteric proteins and cellular control systems

6 July 2018

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Developing an energy landscape for the novel function of a (beta/alpha)8 barrel: ammonia conduction through HisF.

6 July 2018

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Toward understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerolphosphate synthase: crystal structures of a ternary complex and the free enzyme

6 July 2018

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Evolutionarily conserved networks of residues mediate allosteric communication in proteins

6 July 2018

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Structure of imidazole glycerol phosphate synthase from Thermus thermophilus HB8: open-closed conformational change and ammonia tunneling

6 July 2018

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Crystal structure of glutamine amidotransferase fromThermotoga maritima

6 July 2018

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Community structure in social and biological networks

6 July 2018

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Structural evidence for ammonia tunneling across the (beta alpha)(8) barrel of the imidazole glycerol phosphate synthase bienzyme complex

6 July 2018

1 reference

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Crystal structure of imidazole glycerol phosphate synthase: a tunnel through a (beta/alpha)8 barrel joins two active sites

6 July 2018

1 reference

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Imidazole glycerol phosphate synthase from Thermotoga maritima. Quaternary structure, steady-state kinetics, and reaction mechanism of the bienzyme complex

6 July 2018

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Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion

6 July 2018

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Evolutionarily conserved pathways of energetic connectivity in protein families

6 July 2018

1 reference

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Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding

6 July 2018

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6 July 2018

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The limits of protein secondary structure prediction accuracy from multiple sequence alignment.

6 July 2018

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The glutamine hydrolysis function of human GMP synthetase. Identification of an essential active site cysteine

6 July 2018

1 reference

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On the nature of allosteric transitions: implications of non-exclusive ligand binding

6 July 2018

1 reference

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Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits*

6 July 2018

1 reference

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p-aminobenzoate synthesis in Escherichia coli: kinetic and mechanistic characterization of the amidotransferase PabA.

6 July 2018

1 reference

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Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

Comparison of coupled motions in Escherichia coli and Bacillus subtilis dihydrofolate reductase.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

Reaction coupling through interdomain contacts in imidazole glycerol phosphate synthase

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

Substrate-induced changes in the ammonia channel for imidazole glycerol phosphate synthase

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

Thr-431 and Arg-433 are part of a conserved sequence motif of the glutamine amidotransferase domain of CTP synthases and are involved in GTP activation of the Lactococcus lactis enzyme.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

The catalytic mechanism of the amidotransferase domain of the Syrian hamster multifunctional protein CAD. Evidence for a CAD-glutamyl covalent intermediate in the formation of carbamyl phosphate

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

A Network of Conserved Interactions Regulates the Allosteric Signal in a Glutamine Amidotransferase†

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489502

Generalized correlation for biomolecular dynamics

28 October 2018

1 reference

12 December 2020

Functionally important correlated motions in the single-stranded DNA-binding protein encoded by filamentous phage Pf3

1 reference

12 December 2020

Allostery without conformational change. A plausible model

1 reference

12 December 2020

Evolutionarily conserved allosteric network in the Cys loop family of ligand-gated ion channels revealed by statistical covariance analyses

1 reference

12 December 2020

Software news and updates. Carma: a molecular dynamics analysis program

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12 December 2020

Identifiers

DOI

10.1021/CT300377A

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1 August 2017

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1 August 2017

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