(Q34351968)

1 August 2017

title

Hydrophobicity and aromaticity are primary factors shaping variation in amino acid usage of chicken proteome (English)

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1 August 2017

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Yousheng Rao

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1 August 2017

Zhangfeng Wang

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1 August 2017

Xuewen Chai

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1 August 2017

Qinghua Nie

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1 August 2017

Xiquan Zhang

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1 August 2017

language of work or name

English

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publication date

16 October 2014

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1 August 2017

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1 August 2017

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1 August 2017

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1 August 2017

page(s)

e110381

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Creative Commons Attribution 4.0 International

1 August 2017

start time

16 October 2014

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April 2022 Public Data File from Crossref

copyrighted

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cites work

Impact of GC content on gene expression pattern in chicken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Speeding with control: codon usage, tRNAs, and ribosomes

6 July 2018

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Balanced codon usage optimizes eukaryotic translational efficiency

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Mutation bias is the driving force of codon usage in the Gallus gallus genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Across bacterial phyla, distantly-related genomes with similar genomic GC content have similar patterns of amino acid usage

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Coadaptation of isoacceptor tRNA genes and codon usage bias for translation efficiency in Aedes aegypti and Anopheles gambiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Selection for the compactness of highly expressed genes in Gallus gallus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Translational selection and yeast proteome evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Cost-minimization of amino acid usage.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Initial sequencing and analysis of the human genome

6 July 2018

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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

6 July 2018

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Isochores and the evolutionary genomics of vertebrates

6 July 2018

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Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4199684

Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110381

Strong regional biases in nucleotide substitution in the chicken genome.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110381

A strong effect of AT mutational bias on amino acid usage in Buchnera is mitigated at high-expression genes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0110381

Trends in codon and amino acid usage in Thermotoga maritima

21 January 2018

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12 December 2020

The base composition of the genes is correlated with the secondary structures of the encoded proteins

1 reference

12 December 2020

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

1 reference

12 December 2020

Trends of amino acid usage in the proteins from the human genome

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0110381

Identifiers

DOI

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1 August 2017

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1 August 2017

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