(Q34285912)

1 August 2017

title

Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection (English)

1 reference

1 August 2017

1 reference

1 reference

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Andrew Leigh Brown

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James S Koopman

1 reference

1 August 2017

Melissa J Ward

series ordinal

1 reference

1 August 2017

Simon D W Frost

series ordinal

1 reference

1 August 2017

publication date

28 June 2012

1 reference

PLOS Computational Biology

1 August 2017

published in

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1 August 2017

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1 August 2017

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1 August 2017

page(s)

e1002552

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Creative Commons Attribution 4.0 International

1 August 2017

start time

28 June 2012

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

Complex population dynamics and the coalescent under neutrality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Transmission network parameters estimated from HIV sequences for a nationwide epidemic

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Estimated HIV Incidence in the United States, 2006–2009

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

HIV transmission by stage of infection and pattern of sexual partnerships

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Viral phylodynamics and the search for an 'effective number of infections'.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Antiretroviral agents used by HIV-uninfected persons for prevention: pre- and postexposure prophylaxis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Phylodynamics of infectious disease epidemics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Bayesian phylogeography finds its roots

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Evolutionary analysis of the dynamics of viral infectious disease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Longitudinal community plasma HIV-1 RNA concentrations and incidence of HIV-1 among injecting drug users: prospective cohort study.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Universal voluntary HIV testing with immediate antiretroviral therapy as a strategy for elimination of HIV transmission: a mathematical model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Transmission networks of drug resistance acquired in primary/early stage HIV infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Episodic sexual transmission of HIV revealed by molecular phylodynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

BEAST: Bayesian evolutionary analysis by sampling trees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

High rates of forward transmission events after acute/early HIV-1 infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Germs, genomes and genealogies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Brief but efficient: acute HIV infection and the sexual transmission of HIV.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Unifying the epidemiological and evolutionary dynamics of pathogens

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Mixing patterns in networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

The web of human sexual contacts.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Genotypic and phenotypic characterization of HIV-1 patients with primary infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3386305

Transmission of HIV-1 during primary infection: relationship to sexual risk and sexually transmitted infections

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002552

The role of early HIV infection in the spread of HIV through populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002552

A joint back calculation model for the imputation of the date of HIV infection in a prevalent cohort

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002552

Recovering population parameters from a single gene genealogy: an unbiased estimator of the growth rate

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002552

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002552

Detecting hypermutations in viral sequences with an emphasis on G --> A hypermutation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22761556

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transmission networks of HIV-1 among men having sex with men in the Netherlands

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22761556

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1002552

1 reference

journals/ploscb/VolzKWBF12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_wfumpht53fad3nlpsrmf5wemem

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/wfumpht53fad3nlpsrmf5wemem

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3386305

1 reference

1 August 2017

1 reference